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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [659 aa] | Toll-like receptor 3 :TLR3_HUMAN | |
2 | b | H 1 (H) | branched(oligosaccharide) | beta-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 402G(E) 426S 450H(N) 452R(T) 453K 485A(V) 487D 511N(Y) (identity: 37.5 %/31.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7wv5_A_1 identity=31.1% |
queryA 46:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 142 : * ** * ** * * * * * ** * * * * * * * * * : 7wv5_A_1 11:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQK-----------LPMLKVLNLQHNELSQLSDKTF: 96 SecStr :EEE TTS SS S S TT EEE S S GGGGSS S SEEE SS ---THHHHH----------- SS EEE S TTTT: ExpBur :ebebeeeebeebeeebeeebeebbbbebebeebebeebeebeebebbebbebebbebe---eebbee-----------beebeebbbbebebeebeeebb: queryA 143:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 241 : **** * * * * ** * * * * * * * * * *** ** ** *** * : 7wv5_A_1 97:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQIKEFSPGC: 193 SecStr :SS SEEE TT S TTTT S EEE TT S SS SS EEE TT B TGGGGGGTT--- EESEEE TT B TTT: ExpBur :bebeebeebbbbebebeebeeebbeebeebebbbbbebbbeebebbeeebbeebeebbbbebebeebebebbebbee---bebeebbbbebebeebbeeb: queryA 242:FKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIASGAFLTMLPRL: 339 :* * * * * * * * * ** * * * *** * * ** *: 7wv5_A_1 194:FHAIGRLFGLFLNN--------------VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQL: 277 SecStr :TTSSSEE EEE TT-------------- HHHHHHHHHHTTTS EEE TTS B TTTTGGGGGS EEE TTS -- B TTTTTT TT : ExpBur :beebeebebbbbbe--------------bebbeebbeebbebbbebebeebbbbebebeebeeebbebbeebebbbbbbbebeb--eebbeebbeebeeb: queryA 340:EILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS-: 431 :* * * * ** * * * * * * * *** * * * * * * * ** ** * : 7wv5_A_1 278:EYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL: 370 SecStr : EEE S B----- EE- TTTTTT TT SEEE TT B TTT EE TTT-TTT TT EE S B TTTTTT SS EEE TT BS : ExpBur :eebbbbebeb-----eeb-eeebbebbeebebbbbeebbbeeeeeeeeebebeeeb-beebeebeebbbbebbbeebeeebbebbeebeebbbbebbeeb: Contact : b b queryA 432:-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIF-FIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAI: 529 : * * * * * * * * * * *** ** * * * ** * * * * : 7wv5_A_1 371:RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-------------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALV: 456 SecStr : EE TTGGGGGSSS EEE TTS EE TTTTTT TT ------------- EEE SS EEE SGGGTT TT EEE S SEEE- TTTTTT : ExpBur :eebeeebbebbeebebeebbbbebebeebeeebbeebeeb-------------ebbbbbebebbbebebebbeebeebeebebbebeebe-bbeebbeeb: Contact : b bb b b b queryA 530:PHVKYLDLTNNRLDFDNA----SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWN: 625 :* * * * * * * * **** * ** * * * *** * * : 7wv5_A_1 457:PSLQRLML--RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHAN---------------------: 527 SecStr :TT EEE --TTS EESTT SS TTTT TT EEE TTS TTTTTT T------T EEE SS SGGGSTTS---------------------: ExpBur :eebeebeb--eebebeebeeeebbbeebeebbbbbbbebebeebeeebbeebe------ebeebbbbebebbebbeeeb---------------------: queryA 626:DDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRIS: 725 : * *** * * * * ** * * * ** * * * * : 7wv5_A_1 528:--PGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------------------LGLNNLN: 576 SecStr :--TT TT S TT EEE TT TTSS----SS TT EEE--------------------------------------------- SS : ExpBur :--eeeebebbeebeebeebbbbebebeebbeebb----ebbeebeebb---------------------------------------------bbebebe: queryA 726:HLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGDQRG: 811 : ** *** * * ** * * * *** *** * * * * ** * * * *: 7wv5_A_1 577:TLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPHYHG: 662 SecStr : SS SSS TT EEE TTS HHHH-TGGGSS SEEE S EE TTTTHHHHHHHHS- SB TTHHHH EEESGGGTT: ExpBur :ebbeebbeebeebebbbbbebebeebeeebb-eebbeebeebbbeebebebeeebbeebeebbee-eebebeeeeeebebeeeeeeee: |