Protein Model on 7wv5_A_1_C_1 (TEMPLATE: 7wv5 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [659 aa] Toll-like receptor 3 :TLR3_HUMAN
2 b C 1 (E) polymer(polyribonucleotide) RNA (46-MER) 51N(H) 53R(K) 72D(H) 73N 74F(Q) 96H(F) 97N 98P(T) 134D(H) 136Q(E) 565S(N) 567Y(A) 595N 598T(R) 745S(K) (identity: 20.0 %/31.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7wv5_A_1 identity=31.1%
queryA        46:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 142
                : * **   *  **       * * *  *         *     **      *         *                *  *  * *  * * *      :
7wv5_A_1      11:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQK-----------LPMLKVLNLQHNELSQLSDKTF:  96
SecStr          :EEE TTS  SS  S S TT  EEE  S   S   GGGGSS  S SEEE  SS      ---THHHHH----------- SS  EEE  S       TTTT:    
ExpBur          :ebebeeeebeebeeebeeebeebbbbebebeebebeebeebeebebbebbebebbebe---eebbee-----------beebeebbbbebebeebeeebb:    
Contact         :     b b                  bbb                     bbb                                   b b         

queryA       143:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 241
                :     **** *  * *  *         **  * *  *     *       *      * *     *    *        *** ** **  ***  *   :
7wv5_A_1      97:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQIKEFSPGC: 193
SecStr          :SS    SEEE TT       S TTTT S   EEE TT    S    SS   SS  EEE TT     B TGGGGGGTT--- EESEEE TT     B TTT:    
ExpBur          :bebeebeebbbbebebeebeeebbeebeebebbbbbebbbeebebbeeebbeebeebbbbebebeebebebbebbee---bebeebbbbebebeebbeeb:    

queryA       242:FKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIASGAFLTMLPRL: 339
                :*     *  * *                   * *           *  * * **   *       *       *  ***  * *            ** *:
7wv5_A_1     194:FHAIGRLFGLFLNN--------------VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQL: 277
SecStr          :TTSSSEE EEE TT--------------    HHHHHHHHHHTTTS   EEE TTS   B  TTTTGGGGGS   EEE TTS  -- B  TTTTTT TT :    
ExpBur          :beebeebebbbbbe--------------bebbeebbeebbebbbebebeebbbbebebeebeeebbebbeebebbbbbbbebeb--eebbeebbeebeeb:    

queryA       340:EILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS-: 431
                :*   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **    **    * :
7wv5_A_1     278:EYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL: 370
SecStr          : EEE  S  B----- EE- TTTTTT TT SEEE TT B    TTT    EE TTT-TTT TT   EE  S  B    TTTTTT SS  EEE TT BS  :    
ExpBur          :eebbbbebeb-----eeb-eeebbebbeebebbbbeebbbeeeeeeeeebebeeeb-beebeebeebbbbebbbeebeeebbebbeebeebbbbebbeeb:    

queryA       432:-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIF-FIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAI: 529
                :  *   *  * * *        *      * *  *   *                *** ** *           *  *    ** *   * *    *   :
7wv5_A_1     371:RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-------------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALV: 456
SecStr          : EE TTGGGGGSSS   EEE TTS   EE TTTTTT TT ------------- EEE  SS  EEE  SGGGTT TT  EEE  S SEEE-  TTTTTT :    
ExpBur          :eebeeebbebbeebebeebbbbebebeebeeebbeebeeb-------------ebbbbbebebbbebebebbeebeebeebebbebeebe-bbeebbeeb:    

queryA       530:PHVKYLDLTNNRLDFDNA----SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWN: 625
                :*    * *   *    *     *    *  *  **** *            **       *  * * ***   *    *                     :
7wv5_A_1     457:PSLQRLML--RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHAN---------------------: 527
SecStr          :TT  EEE --TTS EESTT SS TTTT TT  EEE TTS      TTTTTT T------T  EEE  SS  SGGGSTTS---------------------:    
ExpBur          :eebeebeb--eebebeebeeeebbbeebeebbbbbbbebebeebeeebbeebe------ebeebbbbebebbebbeeeb---------------------:    
Contact         :                                       b b                           b  b                           

queryA       626:DDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRIS: 725
                :      *   ***  *  * *  *    ** * *      * ** * *                                             *  *   :
7wv5_A_1     528:--PGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------------------LGLNNLN: 576
SecStr          :--TT    TT S TT  EEE TT       TTSS----SS TT  EEE---------------------------------------------  SS   :    
ExpBur          :--eeeebebbeebeebeebbbbebebeebbeebb----ebbeebeebb---------------------------------------------bbebebe:    

queryA       726:HLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGDQRG: 811
                : **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     *  *    *:
7wv5_A_1     577:TLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPHYHG: 662
SecStr          :   SS SSS TT  EEE TTS      HHHH-TGGGSS SEEE  S  EE  TTTTHHHHHHHHS-  SB TTHHHH  EEESGGGTT:    
ExpBur          :ebbeebbeebeebebbbbbebebeebeeebb-eebbeebeebbbeebebebeeebbeebeebbee-eebebeeeeeebebeeeeeeee:    
Contact         :                   b

Input Residue Numbers for Focused Sites

ex) 2,15,123