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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [668 aa] | Toll-like receptor 3 :TLR3_HUMAN | |
2 | b | E 1 (E) | polymer(polyribonucleotide) | RNA (80-MER) | 51N(H) 53R(K) 72D(H) 73N 74F(Q) 96H(F) 98P(T) 134D(H) 136Q(E) 565S(N) 567Y(A) 595N 598T(R) 745S(K) (identity: 14.3 %/30.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7wv3_B_1 identity=30.7% |
queryA 46:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 142 : * ** * ** * * * * * ** * * * * * * * * * : 7wv3_B_1 11:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQK-----------LPMLKVLNLQHNELSQLSDKTF: 96 SecStr :EEE TTS SS S S TT EEE SS GGGGSS SEEE SS ---THHHHS----------- TT EEE S TTTT: ExpBur :ebebeeeebeebeeebeeebeebebbebebeebebeebeebeebeebebbebebeebe---bebbee-----------beebeebbbeebebeebeeebb: Contact : b b bbb b b b b queryA 143:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 241 : **** * * * * ** * * * * * * * * * *** ** ** *** * : 7wv3_B_1 97:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQIKEFSPGC: 193 SecStr :SS TT SEEE TTS S TTSS S EEE SS S SS TT EEE SS B TGGGGGGTT--- EESEEE TT B TTT: ExpBur :bebeebeebbbbebebeebeeebbbebeebebbbbbebbbeebebbeeebbeebeebbbbebebeebeeebbebbee---bebeebbbbebebeebbeeb: queryA 242:FKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIASGAFLTMLPRL: 339 :* * * * * * * * * ** * * * *** * * ** *: 7wv3_B_1 194:FHAIGRLFGLFLNN--------------VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQL: 277 SecStr :TTSSSEE EEE TT-------------- HHHHHHHHHHHHTTS EEE TTS EE TTTTSGGGGS EEE TTS -- EE TTTTTT TT : ExpBur :bebbeebebbbbbe--------------bebbeebbeebbebbbebebeebbbbebebeebeeebbebbeebebbbbbbbebeb--eebeeebbeebeeb: queryA 340:EILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS-: 431 :* * * * ** * * * * * * * *** * * * * * * * ** ** * : 7wv3_B_1 278:EYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL: 370 SecStr : EEE S B----- EE- TTTTTT TT EEE TT B TTT EE TTS-STT TT EEE S B TTTTTT TT EEE TT BSS : ExpBur :eebebbebeb-----ebb-eeebbebbeebeebbbeebbbeeeeeeeeebebeeeb-beebeebeebbbeebbbeebeeebbebbeebeebbbbebbeeb: queryA 432:-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIF-FIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAI: 529 : * * * * * * * * * * *** ** * * * ** * * * * : 7wv3_B_1 371:RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-------------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALV: 456 SecStr : EE TTTTGGGTTS EEE TTS EE TTTTTT SS ------------- EEE SS EEE SGGGTT SS EEE S SEEE- TTTTTT : ExpBur :eebeeebbebbeebebeebbbbebebeebeeebbeebeeb-------------ebbebbebebebebebebbebbeebeebebbebeebe-beeebbeeb: queryA 530:PHVKYLDLTNNRLDFDNA----SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWN: 625 :* * * * * * * * **** * ** * * * *** * * : 7wv3_B_1 457:PSLQRLML--RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHAN---------------------: 527 SecStr :TT EEE --TTS B TT SS TTTT TT EEE SS TTTTTT T------T EEE SS TGGG TTS---------------------: ExpBur :eebeebbb--eebebeebeeeebbbeebeebebbbbbebebeebeeebbeebe------ebeebbbbebebbebbeeeb---------------------: Contact : b b b b queryA 626:DDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRIS: 725 : * *** * * * * ** * * * ** * * * * : 7wv3_B_1 528:--PGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------------------LGLNNLN: 576 SecStr :--TTS TTTT TT EEE SS TTSS----TT SS EEE--------------------------------------------- TTS : ExpBur :--eeeebebbeebeebeebbbbebebeebbeebb----eebeebeebb---------------------------------------------bbebebe: queryA 726:HLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGDQRGKSIVSLELTTC: 822 : ** *** * * ** * * * *** *** * * * * ** * * * * *: 7wv3_B_1 577:TLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 673 SecStr : TTSSTT TT EEE TTS HHHH-TTTTSS SEEE S EE STTTTHHHHHHHHS- SB TTHHHH BEEESTTTTT BSTT TT : ExpBur :ebeeebbeebeebeebbbbebebeebeeebb-bbbbeebeebbbbebebebeeebbbebbebbee-eebebeebeeebebeeeeeeeeeebeebeeeee: Contact : b |