[pdbjlvh2]Protein Model on 7r54_A_1_O

Protein Model on 7r54_A_1_O_1 (TEMPLATE: 7r54 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [740 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		O 1 (A)	non-polymer(I5B)	(5-methoxy-6-pyridin-4-yl-1~{H}-indazol-3-yl)-(4-methylpiperazin-1-yl)methanone	494F 495F 516S 518A 567Y (identity: 100.0 %/93.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7r54_A_1 identity=93.9%

queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**********************************************************************            ******************:
7r54_A_1       5:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 104
SecStr          :   SS EEEE SSSEEEE  SS  SS  S S TTEEEEE  SS   EE TTTTTT TT  EEE  S S  ------------  EE TTSSTT TT  EE:    
ExpBur          :eeeebbebeeeeeebbbebeebebeeeeeebbeebbebeebebebeebeeebbeebeebebbbbbebeee------------ebeeeebbbeebeebbbb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************    ********************************************:
7r54_A_1     105:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYXXXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 204
SecStr          :E  SS  SS  SS  TT SEEE  SS   EE TTTTTT TT  EEE  SS  ----  S EE TTTTTT TT  EEE  SS  SS  SS  TT  EEE T:    
ExpBur          :ebbebebeebbeebbeebebbbbbebebeebebebbeebeebbebebbebbe----eeebeeeeebbeebeebebbbbbbbbbeebeeeebeebbebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
7r54_A_1     205:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 304
SecStr          :T    EE GGGGTT TT  EEE TTSS   SS SS     SSS   EE TTTTTT TT  EEE  SS  S   GGGGTT TT  EEE  SS  HHHHHH :    
ExpBur          :bbebeebeeeebeebeebebbbbbbbbbbeeeeebeeeeeeeeeebebebebbbebeebeebbbbbbbbeebeeebbeebeebebbbbbbbebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
7r54_A_1     305:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 404
SecStr          :SGGGG TT  EEE  S   TT   SS    GGGGG TT  EEE TT   SEE GGGGGGGTT SS  EEE  S   SEE GGGGGS SS  EEE  S   :    
ExpBur          :ebbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbbbbbbbebeeebbebbbebeebebbbbbbbebeebebbbbeebeebeebbbbebeb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :***                            *********************************************************************:
7r54_A_1     405:SPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 504
SecStr          :   ---------------------------- TTS SSS  S SS HHHHTTSEEEE  SS  SS  TTTTTT   EEEEE  SS    B  S SS SST:    
ExpBur          :ebe----------------------------eeeeeebbeeeebbeeebeeebebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe:    
Contact         :                                                               bb                    b b            

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :********************************************************************** ************************   **:
7r54_A_1     505:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTXKYNLESKSLVELVFSGNRLDILWNXXXNR: 604
SecStr          :T  EEE  SS  B  STTTTTT TT  EEE TT   SS  TTTSS  TTGGG SS  EEE TT       -     BSS  EEE TTS HHHHT ---  :    
ExpBur          :ebebbbbbebbbbbbeeebbebbeebbbbbbbebebeeeeeeebbebbbbeebeebeebebbebebeebe-eeebebebbeebbbbebbbbebbe---ee:    
Contact         :                                    b                                                               

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
7r54_A_1     605:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 704
SecStr          :STTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  S       S HHHH S   EEE  SS      TT:    
ExpBur          :bbebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebebbbbeebebeebbeebbebbeebebbbbbebebeebbee:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :****************************************************************************************:
7r54_A_1     705:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 792
SecStr          :SSTT TT  EEE  SS      GGGG   S     EEE TT  EETTTTTHHHHHHHHH TTSB   TTT BEEESGGGTTSBTTS  :    
ExpBur          :bbeebeebebbbbbebebeebeeebbebeeebbbeebbbbebebebeeebeebbebbeeeeebebbebbebebeeeeeeeebbbeeee:

Protein Model on 7r54_A_1_O_1 (TEMPLATE: 7r54 )

Input Residue Numbers for Focused Sites