Protein Model on 7mlm_A_1_G_2 (TEMPLATE: 7mlm )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [590 aa] Toll-like receptor 4,Variable lymphocyte receptor B :TLR4_MOUSE:Q4G1L2_EPTBU
2 b G 2 (A) non-polymer(ZKM) N-[(1S,2R,3E)-2-hydroxy-1-{[(3-O-sulfo-beta-D-galactopyranosyl)oxy]methyl}heptadec-3-en-1-yl]-hexadecanamide 570I(S) 598T(R) 602K(F) 603Y(S) (identity: 0.0 %/29.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7mlm_A_1 identity=29.2%
queryA       259:RCFNAPFPCVPCDGGASI-NID----------RFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF--LTMLPRLEILDLS: 345
                : *       ** *   *  ***             * *   *  * **      *         **  * *  *        * *  ** *  *      :
7mlm_A_1      54:QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK: 152
SecStr          :E TTS  SS  TTS TT  EEE TTS   EE TTTTTT TT  EEE TT    EE TTTTTT TT  EEE TT  -     TTTTTT TT  EEE TTS :    
ExpBur          :ebeeeebeebbeebeeebeebbbbebebeebeeeebeebeebeebbbbebebeebeeebbebbeebbebbbebbe-beebeeebbeebeebebbbbbebe:    

queryA       346:FNYIKGSYP-------QHINISRNF----------SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLS-TINLGINFIKQIDFKLFQNFSNLEIIYLSE: 427
                :      * *          *   **          * *  *    *     *     * * *   *          * *  *    **     *      :
7mlm_A_1     153:LASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN: 251
SecStr          :   ST-T   TT TT  EEE  SS        GGGGT TT  EEE  SS   EE TGGGHHHHH TT   EEE TT    EE TTTTTT EEEEEEEES :    
ExpBur          :beebe-ebebbebeebeebebbebebeebbbbebbeebeebeebbbbebebeebeeebbebbeeeeeeebbbbbbebebeebeeebbeebebebbbbeeb:    

queryA       428:NRISPLVKDTRQSYANSSSFQRHIRKRRSTDFE-------FDP-----------------HSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQF: 501
                :   *   *   *  *       *        *        * *                   *   *     *  * *   *  *   **      *  *:
7mlm_A_1     252:FNSSNIMKTCLQNLAG-----LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN--DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF: 344
SecStr          : SSHHHHHHHHHTTTT----- EEEEEEEE  TTS   S   GGGGGGGGGSEEEEEEE   S--S  GGGGG GGGTT SEEEEES          TT :    
ExpBur          :beeeeebeebbeebbe-----bebebbbbbbeeeeeebeebebebbebbeebebeebebbbbe--ebeeebbebebbbebebbbbbbbebeebeebeeeb:    

queryA       502:E-----------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQN: 582
                :                   **    * *  *            * *   ****  * * *        *    *  **** *      *           :
7mlm_A_1     345:KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMG: 434
SecStr          :  SEEEEES   SS      TT  EEEEES SS  B    ---  TT  EEE  SS  BEEEE  HHHH  S   EEE  S SEEEE S ------- TT:    
ExpBur          :ebeebbbeebebeebbebebeebeebbbbebeeebebeeb---ebeebeebbbbebebebebbbbeebbbbeebebbbbbebeebebeee-------beb:    
Contact         :                                                                                       b            

queryA       583:FTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNW: 681
                :   *  *   *      *        **  *      ***           ** **  *  *    *  *       * *    ** *      *    *:
7mlm_A_1     435:LEELQHLDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISW: 527
SecStr          : TT  EEE TTSEEESTTTTTTT--TT TT  E----EE TTS  EE  TTTTTT TT  EEE TT EEGGGEE S  SS- TT  EEE TTS   EE T:    
ExpBur          :beebeebbbeebebeebeeebbb--ebbeebee----bbbbebebebeeebbbebbeebeebebbebbbeeebbbebbee-beebeebbbbebebeebee:    
Contact         :               b   bb                                                                               

queryA       682:TLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIG: 781
                :       ** **    * ****  *      **  * *  *     * *      **                              ** **  * *   :
7mlm_A_1     528:GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLKELALDTNQLKSVPDGIFDRLTSLQK--------------------------IWLHTNPWDCSCPRI: 601
SecStr          :TTTTT TT  EEE  SS      GGGGTT TT  EEE  SS      TTTTTT TT  E--------------------------EE  SS B   TTTT:    
ExpBur          :bbbeebeebebbebbebebeebeebbbbebeebeebbbbebebebbeebbbeebeebee--------------------------bebeebebeeeeeeb:    

queryA       782:DF-RRWMDE: 789
                :*   **   :
7mlm_A_1     602:DYLSRWLNK: 610
SecStr          :HHHHHHHHH:    
ExpBur          :ebbbebbee:

Input Residue Numbers for Focused Sites

ex) 2,15,123