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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [751 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | G 1 (G) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 472R 475I 476K 487D 489S 511N 534Y 536D (identity: 100.0 %/94.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7crf_B_1 identity=94.3% |
queryA 32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131 :******************************************************************** ********************: 7crf_B_1 10:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109 SecStr : SSSEEEE SSSEEEE SS SS S TTEEEEE SS EE TTTTSS TT EEE S ------------ EE TTSSTT TT EEE: ExpBur :beebbbeeeeeeebbbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebbe------------eebebeeebbeebeebeebb: queryA 132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231 :****************************************************************************************************: 7crf_B_1 110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209 SecStr : SS SS SS TT SEEE SS EE HHHHTT TT SEEE SSSSS SS SS EE TTTTTT TT EEE SS SS S TT SEEE TT: ExpBur :bbebebeebbeebbebbeebbbbebebbebeeebbeebeebebbebbbbbbeeeebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb: queryA 232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331 :****************************************************************************************************: 7crf_B_1 210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309 SecStr :S EE TTTTSS TT EEE TTSS SS SS GGG EE TTTTTT TT EEE SS S GGGGTT TT EEE SS HHHHHS S: ExpBur :bebeebeeeebeebeebbbbbbbbbbbbeeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbbbebbebbeebe: queryA 332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431 :****************************************************************************************************: 7crf_B_1 310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409 SecStr :GGGG TT EEE S TT SB GGGGG TT EEE TT SEE GGGGGGGSS TT EEE S EE GGGGSS SS EEE SS : ExpBur :bbeebeebeebbbbbbeeeeeeeeebebbeebbebeebebbbbbbbbbeebeeebbebbbebeebbbbbbbbbebeebebebbeebeebebbbbbebebe: queryA 432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531 :***** ************************************************************************: 7crf_B_1 410:PLVKDXXXXXXXXXXXXXXXXXXXXXXXEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509 SecStr : ----------------------- TTS SSS S SS HHHHTTS EEE TTS SS TTTTSS SEEE SS B S SSTTSTT: ExpBur :bbeee-----------------------eeebeeebbbeeeebbeeebeeeeebbbbbebebeebbebbbeebbebbbbbbbebebebebebebbeebee: Contact : b bb b b b queryA 532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631 :****************************************************************************************************: 7crf_B_1 510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609 SecStr : EEE SS B TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TT SS S EESS EEE TTS HHHHTT TT TT: ExpBur :bebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebebbebbbeebeeeeebebebbeebbbbbbbbbebbeeeeeeb: Contact : b b queryA 632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731 :****************************************************************************************************: 7crf_B_1 610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709 SecStr :TTTTTEETT EEE SS S HHHHTTS TT SEEE SS S GGGGGG TT EEE SS S GGGT S EEE SS TTT: ExpBur :bebbeebeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbebbebbbbbebebeebbeeb: queryA 732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTCVSDVT: 827 :********************* *****************************************************************: 7crf_B_1 710:LSEVSSLKHLDLSSNLLKTINXXXXXXXXXXKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTCVSDVT: 805 SecStr :SSS TT EEE TTS S ---------- EEE TT EE SSTTHHHHHHHHH SSB S GGG BEEESTTTTTSBTTS SSS S : ExpBur :eeebebbebbbbbebebeebe----------ebeebbbbebebbbbeebbebbebbeeeeebbbeebbebebbbbeebeeebbeebeeeeeeeeee: |