Protein Model on 7c76_A_1_F_1 (TEMPLATE: 7c76 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [691 aa] Toll-like receptor 3 :TLR3_HUMAN
2 b F 1 (F) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 402G(E) 426S 450H(N) 485A(V) 487D 511N(Y) (identity: 33.3 %/30.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7c76_A_1 identity=30.6%
queryA        46:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 142
                : * **   *  **       * * *  *         *     **      *         *                *  *  * *  * * *      :
7c76_A_1      34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQK-----------LPMLKVLNLQHNELSQLSDKTF: 119
SecStr          :EEE TTS  SS  S S TT  EEE  SS      SGGGSS  S  EEE  SS  SS  ---GGGGGG----------- TT  EEE TT    S  GGGG:    
ExpBur          :ebebbeeeeeebbeebeeebbebebbebebeebebeebeebeebebbbbbebebeebe---eebbee-----------beebeebbbeebebeebeeebb:    

queryA       143:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 241
                :     **** *  * *  *         **  * *  *     *       *      * *     *    *        *** ** **  ***  *   :
7c76_A_1     120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQIKEFSPGC: 216
SecStr          :SS     EEE  S       S SS S TT  EEE TTS  SS    SSS  TT  EEE  SS   EE HHHHGGGTT--- EESEEE  S    EE TTS:    
ExpBur          :bebeebbebebbbbebeebeebbbeebeebeebbbbebbbeebebbeeebbeebebbbbbebebebbeeebbebbee---bbbeebbbbebebeebbeeb:    

queryA       242:FKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIASGAFLTMLPRL: 339
                :*     *  * *                   * *           *  * * **   *       *       *  ***  * *            ** *:
7c76_A_1     217:FHAIGRLFGLFLNN--------------VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQL: 300
SecStr          :GGGSSEE EEE  S--------------    HHHHHHHHHHSTT    EEE TT    EE TTTT GGGGS   EEE  SS  -- EE TTTTTT SS :    
ExpBur          :bebbeebebbbbbe--------------bebbeebbeebbebbbebebeebbbbebebeebeeebbebbeebebbbbbbbebeb--eebbeebbeebeeb:    

queryA       340:EILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS-: 431
                :*   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **    **    * :
7c76_A_1     301:EYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQXXXXXXLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL: 393
SecStr          : EEE  S  B-----SEE- TTTT S SS  EEE TT B   ------  EE TTT-TTT TT   EE  S  B    TTSSTT SS  EEE TT BS  :    
ExpBur          :eebbbbebeb-----eeb-eeebbebbeebeebbbeebbbee------ebebeeeb-bebbeebeebbbeebbbeebeeebbeebeebeebbbbebbeeb:    
Contact         :                                                                     b                       b      

queryA       432:-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIF-FIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAI: 529
                :  *   *  * * *        *      * *  *   *                *** ** *           *  *    ** *   * *    *   :
7c76_A_1     394:RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-------------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALV: 479
SecStr          : EE TTSSGGGTT    EEE  SS   EE TTTTTT SS ------------- EEE  SS  EEE  S TTTT SS  EEE  S SEEE-  TTSSSS :    
ExpBur          :eebeeebbebbeebebeebebbebebeebeeebbeebeeb-------------eebbbbebebbbebebebbebbeebebbebbebeebe-bbeebbeeb:    
Contact         :                   b                                  b b                        b                  

queryA       530:PHVKYLDLTNNRLDFDNA----SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWN: 625
                :*    * *   *    *     *    *  *  **** *            **       *  * * ***   *    *                     :
7c76_A_1     480:PSLQRLML--RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHAN---------------------: 550
SecStr          :TT  EEE -- SS  BS   SS TTSS TT  EEE  SS      STTS S T------T  EEE  SS  TTTS SSS---------------------:    
ExpBur          :eebeebbb--eebebeebebeebbbeebeebbbbbbbbbebeebeeebbeebe------ebeebbbbebebbebbeeeb---------------------:    

queryA       626:DDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRIS: 725
                :      *   ***  *  * *  *    ** * *      * ** * *                                             *  *   :
7c76_A_1     551:--PGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------------------LGLNNLN: 599
SecStr          :--TT     SSS  S  EEE  SS      SSSS----SS SS  B  ---------------------------------------------  SS   :    
ExpBur          :--eeeebebbeebeebeebbbeebebeebbeebb----ebbeebeebb---------------------------------------------bbebebe:    

queryA       726:HLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGDQRGKSIVSLELTTCV: 823
                : **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     *  *    *          * :
7c76_A_1     600:TLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC-: 696
SecStr          :   SSSSTT TT  EEE TT       HHHH-TGGGSS  EEE  S  EE  HHHHHHHHHHHHS- S B SS TTT  EEESGGGTT  GGG   SSS-:    
ExpBur          :ebeeebbeebeebeebbbbebebeebeeebb-eebbeebeebbbbebebebebebbbebbebeee-eebebeebeeebebeeeeeeeeeebeebeeeeb-:    

queryA       824:SDVTAVILFFF--TFFITTMVMLAALAH: 849
                : *     ***   *           * *:
7c76_A_1     697:KDSAPFELFFMINTSILLIFIFIVLLIH: 724
SecStr          :TTTS HHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :eeeeeeeeeeeeeeeeeeeeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123