Protein Model on 6v9u_A_1_AA_1 (TEMPLATE: 6v9u )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [738 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b AA 1 (B) non-polymer(QSM) 2-(3,4-dimethoxyphenyl)-5-(piperidin-4-yl)-3-(propan-2-yl)-1H-indole 494F 495F 516S 518A 519Q 541R (identity: 100.0 %/93.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6v9u_A_1 identity=93.8%
queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :********    ********************************************************             *******************:
6v9u_A_1      10:RSYPCDEKXXXXSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELL: 109
SecStr          :   SSEE ----  EEE  SS  SS  S S TT  EEE TT    EE TTTTTT TT  EEE TT   -------------  EE TTSSTT SS  EEE:    
ExpBur          :eeebbeee----eeebbbeebebeebbeebeeebbebebbebebeebeeebbeebeebebbbbbebee-------------ebebeeebbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :*****************************************************  *********************************************:
6v9u_A_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE  SS   EE TTTTTT  S SEEE  SSSS  --    EE TTTTTS TT  EEE  SS  SS  SS  TT  EEE TT:    
ExpBur          :bbebebeebbeebbeebebbbbbebebeebeeebbbebeebeebebbbbbbee--eeebeeeebbbeebeebebbbbbbbbbeebbeebbeebbebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
6v9u_A_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :    EE TTTTSS TT SEEE TTSS    S SS     TTS   EE TTTTTT TT  EEE  SS  S   GGGGTT SS  EEE  SS  HHHHHS G:    
ExpBur          :bebeebebeebeebeebebbbbbbbbbbeeeeebeeeebeeeeebebebebbeebeebeebbbbbbbbeebebebbeebeebbbbbbbbbebbebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
6v9u_A_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG SS  EEE  S   TT   SS    GGGGG TT  EEE TT   SEE TTTTGGGTT SS  EEE  SS  SEE THHHHSSSS  EEE  SS   :    
ExpBur          :bbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbbbbbbbbbeeebbebbbebeebebbbbbebebeebebebbeebeebbebbbbebebe:    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :****                         ***********************************************************************:
6v9u_A_1     410:PLVKXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          :    -------------------------  SSS SSS  S SS HHHHTSSEEEE  SSS SS  TTTTTT   EEEEE TTS    B  S TTSSSTT:    
ExpBur          :beee-------------------------eeeeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebeeebbeebee:    
Contact         :                                                              bb                    b bb            

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
6v9u_A_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          : SEEE  SS  B  STTTTTT TT  EEE TT THHHH SSS     GGGG SS  EEE TT      SS  S EESS  EEE TTS HHHHTT TT  S:    
ExpBur          :bebbbbbebebbbeeeebbbbbeebebbbbbebeebbbeeeeebbbebbeebeebbebebbebebeebeebeebebebbeebbbbbbbbeebbebeeeeb:    
Contact         :         b                                                                                          

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
6v9u_A_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTEETT  EEE TTS  S   HHHHHTS TT SEEE  SS      GGGGGG SS  EEE TT       S GGGT SS  EEE TTS      TTS:    
ExpBur          :eebbeebeebeebbbbebebeebeeebbeebbebbbebbbbebebbebebebbeebeebebbbbeebebeebbeebeeebebbeebbbbebebeebbeeb:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :*************************     *********************************************************:
6v9u_A_1     710:LSEVSSLKHLDLSSNLLKTINKSALXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr          :TTT SS  EEE TTS      TTT -----    EEE TT  EE SSTTHHHHHHHHH  SSB S GGG BEEESTTTTTSBSSS  :    
ExpBur          :bebbeebebbbbbebebeebeeebb-----eebeebbbbebebebeeebeebeebbeeeeebebeebbbbebeeeeeeeeebbbebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123