[pdbjlvh2]Protein Model on 5zsb_B_1_D

Protein Model on 5zsb_B_1_D_1 (TEMPLATE: 5zsb )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	B 1 (A)	polymer(polypeptide(L)) [773 aa]	Toll-like receptor 7 :B3Y653_MACMU
2	b		D 1 (D)	polymer(polyribonucleotide)	RNA (5'-R(APUPUPAP*A)-3')	625N(R) (identity: 0.0 %/41.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5zsb_B_1 identity=41.3%

queryA        30:FSRSYPCDEK--KQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNL: 127
                :*    ***         **  *    * * *       * * *  * *  *   **  *  *  *    *                * *    *  *  *:
5zsb_B_1       8:FPKTLPCDVTLDVSKNHVIVDCTDKHLTEIPGGIPTNTTNLTLTINHIPDISPASFHRLVHLVEIDFRCNCVPIRLGSKSNMCPRRLQIKPRSFSGLTYL: 107
SecStr          :S    SSEEEEETTTTEEEEE TT   SS  S   TT  EEE  SS   EE TTTTTT TT SEEE   SS  TTTS SSS   S  EE TTTTTT TT :    
ExpBur          :eeeebebeeeeeeeeeebebebbebebeebbeebeeebbbbbbbebebeebbeebbeebeebeebbbbbbbbbeeeeeeeeeeeeebeeeeebbeebeeb:    

queryA       128:RELLLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRK: 226
                :  * *  ***  ** *** **  ***  ***  * **    * *   ***  ***    *     **   *  ** *  ***  *    **  *** *  :
5zsb_B_1     108:KSLYLDGNQLLEIPQGLPPSLQLLSLEANNIFSIRKEQLTELANIEILYLGQNCYYRNPCYVSYSIEKDAFLNLTKLKVLSLKDNNVTTVPTVLPSTLTE: 207
SecStr          : EEE TTS   S      TT  EEE TTSS  EE TGGGGGGTT  EEE  SSSBTTB  SS  EE TTTTTT TT  EEE  SS   S  SS  TT SE:    
ExpBur          :ebbbbbbbbbeebbeebbeebebbbbbbbbbeebeeebbebbeebeebebbbbbbeebebeeebeeeeebbeebeebebbbbbbbebeebbeebbebbbe:    

queryA       227:LFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGE: 326
                :* * *  *  * * **  *  *  ********** ****** **       *   **  ** *  * * * **      ****   *  ***  * *  *:
5zsb_B_1     208:LYLYNNMIAEIQEDDFNNLNQLQILDLSGNCPRCYNAPFPCTPCKNNSPLQIPVNAFDALTELKVLRLHSNSLQHVPPRWFKNINNLQELDLSQNFLAKE: 307
SecStr          :EE  SS   B  TTTTTT TT  EEE TTSS   TT SS     GGG   B  TTTTTT TT  EEE  SS  S   GGGGSS     EEE  SS  TTH:    
ExpBur          :bbbbbbebeebeeebbeebeebebbbbbbbbbbeeeeebeeeebeeeeebebeeebbebbeebebbbbbbbbbeebeeebbeebeebeebbbbbbebbeb:    

queryA       327:IASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLS: 426
                :*    **  ** *  ******     *    * *  ** * **  *  ***** **      **  * **    ** ****      *  *  *  * **:
5zsb_B_1     308:IGDAKFLHFLPNLIQLDLSFNFELQVYRASMNLSQAFSSLKSLKILRIRGYVFKELKSFQLSPLHNLQNLEVLDLGTNFIKIANLSMFKQFKRLKVIDLS: 407
SecStr          :HHH GGGGG TT  EEE  S   TT  BSS    GGGGG TT  EEE TT  BSEE GGGGGGGTT TT  EEE  SS   EE GGGGGGGTT SEEE  :    
ExpBur          :bbebebbeebeebeebbbbbbbeeeeeeeebebbebbeebeebebbbbbbbbbeebeeebbebbeebeebebbbbbebebeebebbbbeebeebebbbbb:    

queryA       427:ENRISPLVKDTRQSYANSSSFQRHIRKRRSTD----FEFDPHSN-----FYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSN: 517
                : * ***                              *  *                     *  **  **** ******    *  *    ***** *  :
5zsb_B_1     408:VNKISPXXXXXXXXXXXXXXXXXXXXXXXVLEQLYYFRYDKYARSCRXXXXXXXXXXXXXSCYKYGQTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLI: 507
SecStr          :SS    -----------------------   SS TT S TT     -------------  GGGS EEE  SS      GGGGTT TT SEEE TTS  :    
ExpBur          :ebebee-----------------------eebeeebeeebeeeeeee-------------ebeeeeebbbbbebebeebeeeebeebebbbbbbbbebeb:    

queryA       518:AQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSG: 617
                : * * * **       ***  *****     *  **  ***** * *****   * ** * *  *   *  *    * *   *     ** **  * * *:
5zsb_B_1     508:SQTLNGSEFQPLAELRYLDFSNNRLDLLHSTAFEELRKLEVLDISSNSHYFQSEGITHMLNFTKNLKVLQKLMMNDNDISSSTSR-TMESESLRTLEFRG: 606
SecStr          :     S S TT TT  EEE  SS   TT TTTTTT TT  EEE  S  GGGGSTT    GGGGGG TT  EEE TT      SSS-   BSS  EEE  S:    
ExpBur          :ebebebebbebbeebebbbbbebebbbeeeebbebbeebebbbbbebeeebeeeeeebbbebbeebeebeebbbbebebeebebe-ebebebbebbbbeb:    

queryA       618:NRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTL: 717
                :* ** ** * ****   ** *  *  ** * * *   *   *   *  *  *    * ** * *  *     ** ***  * *      **    **  *:
5zsb_B_1     607:NHLDVLWRDGDNRYLQLFKNLLKLEELDISKNSLSFLPSGVFDGMPPNLKNLSLAKNGLKSFIWEKLRYLKNLETLDLSHNQLTTVPERLSNCSRSLKNL: 706
SecStr          :S HHHHT TT  TTTTTTTTBTT  EEE  SS  SS  TTTTTTS TT  EEE  SS      GGGGGG TT  EEE  SS      S GGGT SS  EE:    
ExpBur          :bebeebbeeeeeebbebbeebeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebeebeebeebebbebbebebeebbeebbebbeebeeb:    
Contact         :       b                                                                                            

queryA       718:LLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLV-DVICASPGDQRGKSIVS: 816
                : *  * *  *   **     *  ******    * *          * ** ** * * ****   *  *   *  * ** *  ** *  **   * *  *:
5zsb_B_1     707:ILKNNQIRSLTKYFLQDAFQLRYLDLSSNKIQMIQKTSFPENVLNNLKMLLLHHNRFLCTCDAVWFVWWV-QHTEVTIPYLATDVTCVGPGAHKGQSVIS: 805
SecStr          :E  SS      TTTTTT TT  EEE  SS      TTTS HHHHTT SEEE  S  EE SGGGHHHHHHH-HH  S  TTTTTS BEEESGGGTT BSTT:    
ExpBur          :bbeebebeebbeebbeebeebeebbbbebebeebeeebbbeebbebbeebbbbebebebeeebebbbebb-bbbebebeeeeeebebebeeeeeeeebbe:    

queryA       817:LELTTC: 822
                :* * **:
5zsb_B_1     806:LDLYTC: 811
SecStr          :   GGG:    
ExpBur          :bebeee:

Protein Model on 5zsb_B_1_D_1 (TEMPLATE: 5zsb )

Input Residue Numbers for Focused Sites