Protein Model on 5zln_A_1_C_1
(TEMPLATE: 
5zln
)Protein Model on 5zln_A_1_C_1
(TEMPLATE: 5zln
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [751 aa] | Toll-like receptor 9 :TLR9_MOUSE | |
| 2 | b | C 1 (C) | polymer(polydeoxyribonucleotide) [10 base] | DNA (5'-D(*AP*GP*GP*CP*GP*TP*TP*TP*TP*T)-3') | 51N(W) 53R(F) 55Q(K) 72D(S) 74F(R) 76T(H) 77H 96H(W) 101Q(P) 106N(S) 107P 108G(L) 110Q(F) 111S 183F(Y) 184N(K) 210F(Y) 231N(Y) 258P(R) 264P 265F(N) (identity: 19.0 %/34.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5zln_A_1 identity=34.4% |
queryA 35:PCDEKKQNDSVIAECSNRRLQEVPQTVGKY----VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
:** * * * ** * * * * * * * * * ** ** * * * * ** * **:
5zln_A_1 9:PCELKPHG---LVDCNWLFLKSVPRFSAAASCSNITRLSLISNRIHHLHNSDFVHLSNLRQLNLKWN--CPPTGLSPLHFSCHMTIEPRTFLAMRTLEEL: 103
SecStr :TSEE SSS---EEE TTS SS TT S TT EEE TT EE TTTTGGGTT SEEE TTS--B GGGSTT EE TTTTTT TT EE:
ExpBur :ebeeeeee---ebebeeeebeebbebeebeebeebeebbbbbbebeebeeebbeebeebeebebeeb--bbbeebbeeeeebebeeeeebbbebeebeeb:
Contact : b b b b b bb b b bbb bb
queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCE-KTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229
: * * * ** ** *** ** * * * *** * * * ** *** * * ** ** ** * :
5zln_A_1 104:NLSYNGITTVPR-LPSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSNLTHLSLKYNNLTKVPRQLPPSLEYLLV: 202
SecStr :E SB SS - TT EEE TTSS EE TTTTTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS SS SS TT SEEE :
ExpBur :ebbebbbeebbe-bbeebeebbbbbbebeebeeebbeebeebebbebbbbbbeebeeeeebebeebbbeebeebbebbbeebbbeebbeebbeebeebbb:
Contact : bb b
queryA 230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIAS: 329
:* * ** * * ** *** ** ** ** * * * * * * * * ** * ** **** * * * :
5zln_A_1 203:SYNLIVKLGPEDLANLTSLRVLDVGGNCRRCDHAPNPCIEC-GQKSLHLHPETFHHLSHLEGLVLKDSSLHTLNSSWFQGLVNMSVLDLSENFLYESIQH: 301
SecStr : SS EE GGGGTT TT SEEE TTSS GGG SS -SSSS EE TTTTTT TT EEE SS GGGGTT TT EEE TTSS TTHHHH:
ExpBur :bbbebeebbeebbeebeebeebbbbbbbbbeeeeeeeeeeb-eeeebebeeebbeebeebebbbbebbbbeebeebbbeebeebbebbbbbbbbbebbee:
Contact : b b bb
queryA 330:GAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENR: 429
: * ** * ***** * * * ** * * * * * ** * * * *** * * * * ** **:
5zln_A_1 302:TNAFQNLTRLRKLNLSFNYRKKVSFARLHLASSFKNLVSLQELNMNGIFFRSLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFVDLSDNR: 401
SecStr : TTTT TT EEE TT TT BS GGGGG TT EEE TTS BSEE TTTSGGGTT TT EEE SS EE GGGGGS SS EEE SS :
ExpBur :bebbeebeebeebebbbbbeeeeebeebebbebbeebeebeebbbbbbbbeebeeebbeebbebeebbbbbbbebebeebebbbbeebeebeebbbbebe:
queryA 430:ISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAI: 529
:** * * *** * * * * * ** ** ** ** * * :
5zln_A_1 402:ISGPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNFMD-----RCKNFKFTMDLSRNNLVTIKPEMFVQLSRLQCLSLSHNSIAQAVQGSQFLPL: 496
SecStr : SS -------------------------------- GGG-----GGTT S EEE SS SS GGGGTT TT SEEE TTS S SSTT :
ExpBur :bebeee--------------------------------eebbe-----ebeeeebbbbbbebebeebeeebbeebeebbbbbbbebebebebebebbeeb:
queryA 530:PHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDN: 629
: *** * ** ** * ******* * * * * * * * ** * * * * * * **** * * :
5zln_A_1 497:TNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSQPFSMKGIGHNFSFVAHLSMLHSLSLAHNDIHTRVSSH-LNSNSVRFLDFSGNGMGRMW-DEGG: 594
SecStr :TT EEE SS TTTTTT TT EEE TT GGGG TT GGGGG TT EEE TTS SSS S - EESS EEE SS HHHHT-TSTT:
ExpBur :eebebbbbbebebebeeeebbebbeebebbbbbebeebbeeeeeebebebbeebeebebbbbbbbebbbebbee-bebebbeebbbbebbbeebb-eeee:
queryA 630:RYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPS: 729
: * * ** * **** * * *** ** * ** * ** ** * * ** *** ** * ** * * * * * :
5zln_A_1 595:LYLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFQWTSLSFLPNLEVLDLAGNQLKALTNGTLPNGTLLQKLDVSSNSIVSVVP: 694
SecStr :TTTTTTTEETT EEE SS S HHHHHTS TT EEE TTS GGGGGG TT EEE TTS SB SS S TT EEE SS B T:
ExpBur :ebbebbeebeebeebbbbebebeebeeebbebbbeebeebbbeebebeebebebbeebeebeebbbbebebebbeeeebbeebebeebbbbebebeebee:
queryA 730:GFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVD-VICASPGDQRGKSIVSLELTTC: 822
: * ** ** * *** * * * ** * * * * * * * *** * ** * *:
5zln_A_1 695:AFFALAVELKEVNLSHNILKTVDRSWF-GPIVMNLTVLDVRSNPLHCACGAAFVDLLLE--VQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLC: 785
SecStr :TTTTT TT EEE SS S GGGT-GGGGGG SEEE S EE TT THHHHHHH--TGGGSTTHHHHSBEEESGGGBTSBTTSS SS :
ExpBur :ebbeebeebeebebbebebeebeeebb-eebbeebeebbbeebebebeeebebbebbbe--beeebebbbeebebeeeeebeeebbbeeebeee:
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[assembly_id:1]
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