Protein Model on 5z15_A_1_I_1 (TEMPLATE: 5z15 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [743 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b I 1 (A) non-polymer(7VL) 4-(7-chloranylquinolin-4-yl)-2-methyl-phenol 494F 495F 518A 519Q 520V (identity: 100.0 %/94.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5z15_A_1 identity=94.5%
queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :*********************************************************************           ********************:
5z15_A_1      10:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109
SecStr          :  SSSEEEEETTEEEEE  SS  SS  S   SS SEEE  SS   EE TTTTTT TT  EEE  S S  -----------   EE TTTTTT TT  EEE:    
ExpBur          :eeebbbeeeeeeeebbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebeee-----------eebebeeebbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
5z15_A_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE  SS   EE HHHHTT TT SEEE  SSBSS SS SS EE TTTTTT TT  EEE  SB  SS  SS  TT SEEE TT:    
ExpBur          :bbebebeebbbbbbebbeebbbbebebeebeeebbbebeebeebbbbbbbeeeeebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbe:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
5z15_A_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE TTTTTT TT  EEE TTSS   TT SS     STT   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHS G:    
ExpBur          :bebeebbeeebeebeebbbbbbbbbbbbbeeeeeeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbbbebbebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
5z15_A_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE GGGGTGGGT TT  EEE  SS   EE GGGGGG TT  EEE TT    :    
ExpBur          :bbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbebbbbbebeeebbebbbebeebbbbbbbbbebeebebebbeebeebebbbbbebebe:    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :***                           **********************************************************************:
5z15_A_1     410:PLVXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          :   --------------------------- TTS SSS  S SS HHHHTTS EEE TTS  SS  TTTTTT    SEEE  SS    B  S SSTTSTT:    
ExpBur          :bee---------------------------eeeeeebbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbebbebebebebebebbeebee:    
Contact         :                                                              bb                      bbb           

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
5z15_A_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          :  EEE  SS  B  STTTTTT TT  EEE TT   TT  S   B   GGGG SS  EEE TTS    B S  S  BSS  EEE  SS HHHHHH TT TT:    
ExpBur          :bebbbbbebebebeeeebbebbeebebbbbbebeebeeeeeeebbbebbeebeebeebebbebebeebeeeeebebebbeebbbbbbebeebbeeeeeeb:    

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
5z15_A_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGS TT  EEE  SS      S STTT SS  EEE  SS      TTS:    
ExpBur          :bebbeebeebeebbbbebebeebbeebbebbbebbbebbbbebebeebebebbeebeebeebbbeebebeebbeebbebbebbebbbbbebebeebbeeb:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 817
                :*************************     ********************************************************:
5z15_A_1     710:LSEVSSLKHLDLSSNLLKTINKSALXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 795
SecStr          :STTT S  EEE  SS      TTT -----    EEE TT  EE SSTTHHHHHHHHH TTSB   GGG BEEESTTTTTSBTT  :    
ExpBur          :beebeebeebbbbebebeebeeebe-----eebeebebbebebebeeebeebbebbeeeeebebbebbebebeeeeebeeebbeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123