[pdbjlvh2]Protein Model on 5z14_A_1_L

Protein Model on 5z14_A_1_L_1 (TEMPLATE: 5z14 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [743 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		L 1 (A)	non-polymer(7VC)	4-(7-methoxyquinolin-4-yl)-2-methyl-phenol	494F 495F 518A 519Q 520V 567Y (identity: 100.0 %/94.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5z14_A_1 identity=94.4%

queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :*********************************************************************           ********************:
5z14_A_1      10:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109
SecStr          :  SSSEEEEETTEEEEE  SS  SS  S   TTEEEEE  SS   EE TTTTTT TT  EEE  S S  -----------   EE TTTTTT TT  EEE:    
ExpBur          :eeebbbeeeeeeeebbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebeee-----------ebbebeeebbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
5z14_A_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE  SS   EE HHHHSS TT SEEE  SSBSS SS SS EE TTSTTS TT  EEE  SB  SS  SS  TT SEEE TT:    
ExpBur          :bbebebeebbbbbbebbebbbbbebebeebbeebbbebeebeebbbbbbbeeeeebeebebeebbbeebeebebbbbbbbbbeebbeebbeebeebebbe:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
5z14_A_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE SGGGTT TT  EEE TTSS   TT SS     STT   EE TTTTTT TT  EEE  SS  S   GGGGTT TT  EEE  SS  HHHHHS G:    
ExpBur          :bebeebbeeebeebeebbbbbbbbbbbbbeeeeeeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbebebbebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
5z14_A_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG TT  EEE  S   TT   SB    GGGGG TT  EEE  S   SEE GGGGHHHHT TT  EEE TT    EE GGGGGG TT  EEE  S    :    
ExpBur          :bbeebeebeebbbbbbeeeeeeeeebebbebbeebeebebbbbebbbbbebeeebbebbbebeebbbbbbbebebeebebebbeebeebeebbbbebebe:    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :***                           **********************************************************************:
5z14_A_1     410:PLVXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          :   --------------------------- TTS SSS  S SS HHHHTTS EEE TTS  SS  TTTTTT    SEEE  SS    B  S TTTTSTT:    
ExpBur          :bee---------------------------eeeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee:    
Contact         :                                                              bb                      bbb           

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
5z14_A_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          :  EEE  SS  B  STTTTTT TT  EEE TT   TT  S   B   GGGG SS  EEE TT     B S    EESS  EEE  SS HHHHHT TT TT:    
ExpBur          :bebbbbbebebebeeeebbebbeebebbbbbebeeeeeeeeeebbbebbeebeebeebebbebebebbeebeebebebbeebbbbbbbbbebbebeeeeb:    
Contact         :                                   b                                                                

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
5z14_A_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTEETT  EEE  SS  S   HHHHHTS TT SEEE  SS      GGGGGG TT  EEE  SS      S  TTT S   EEE  SS      TTS:    
ExpBur          :bebbebbeebeebbbbebebeebbeebbebbbebbbebbbbebebeebebebbeebeebeebbbebbebeebbeebbebbebbeebbbbebebeebbeeb:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :************************      *********************************************************:
5z14_A_1     710:LSEVSSLKHLDLSSNLLKTINKSAXXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr          :STT  S  EEE  SS  S   TT ------    EEE TT  EE SSSTHHHHHHHHT TTSB   GGG BEEETTTSTTSBTTS  :    
ExpBur          :beebeebebbbbbebebeebeeeb------eebeebebbebebebeeebeebbebbeeeeebebbebbebebeeeeebeeebbeebe:

Protein Model on 5z14_A_1_L_1 (TEMPLATE: 5z14 )

Input Residue Numbers for Focused Sites