Protein Model on 5y3m_F_1_C_1 (TEMPLATE: 5y3m )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) F 1 (B) polymer(polypeptide(L)) [732 aa] Toll-like receptor 9 :TLR9_BOVIN
2 b C 1 (F) polymer(polydeoxyribonucleotide) [5 base] DNA (5'-D(*TP*CP*GP*T)-3') 261F(D) 262N(H) 263A 348Y 349I(H) 350K 351G(K) 352S(V) 353Y(S) 354P(F) 355Q(A) 378V(F) 380Q(R) 405F (identity: 28.6 %/37.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5y3m_F_1 identity=37.4%
queryA        35:PCDEKKQNDSVIAECSNRRLQEVPQ-TVGKY---VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**            *    *  **    *     ** * *  * * *     *  * **   **  *         *        *    **    * **:
5y3m_F_1      13:PCELQPHGQ---VDCNWLFLKSVPHFSAGAPRANVTSLSLISNRIHHLHDSDFVHLSNLRVLNLKWN--CPPAGLSPMHFPCRMTIEPNTFLAVPTLEEL: 107
SecStr          :TSEEEGGGE---EE TTS  SS     TTS GGG  EEE TT    EE TTSSTT TT  EEE TTS--B  TTTSTT      EE TTTTTT TT  EE:    
ExpBur          :ebbeeeebe---bbbbeeebeebbebeeebebeebbbbbbbbbebeebeeebbeebeebeebebeeb--bbbebbbeeeeebebeeeeebbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229
                : *  *     *     **  ***    *          *  *  **   ***    *        *    * **  ***  * *  **  ** **  * *:
5y3m_F_1     108:NLSYNGITTVPALP-SSLVSLSLSHTSILVLGPTHFTGLHALRFLYMDGNCYYMNPCPRALEVAPGALLGLGNLTHLSLKYNNLTEVPRRLPPSLDTLLL: 206
SecStr          :E  SB  SS     -TT  EEE TTSS  EE GGGGTT TT  EEE   SSBTTB  SS  EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE :    
ExpBur          :ebbebbbeebbebb-eebebbbbbbbbbeebbeeebeebeebeebebbbbbbeebebeeebebeebbbeebeebbbbbbeebebeebbeebbeebebbbb:    

queryA       230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGG-ASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIA: 328
                :*   *     **   *  *  **  *** **  *  **  *         * *    *  *  * *   ** *    **     * ****  * *   * :
5y3m_F_1     207:SYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCRECPKNFPKLHPDTFS--HLSRLEGLVLKDSSLYKLEKDWFRGLGRLQVLDLSENFLYDYIT: 304
SecStr          :TTS   EE GGGGTT TT  EEE  SSSB TTS SS   B  TT  EE TTSST--T TT  EEE TTS  SS  GGGGTT TT  EEE TTSSTTTHHH:    
ExpBur          :bbbebbebeeebbeebeebeebbbbbbbbbeeeeebeeeebeeeeeebeeebbe--ebeebebbbbebbbbeebeeebbeebeebeebbbbbbbbbebbe:    
Contact         :                               bbb                                                                  

queryA       329:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSEN: 428
                :       *  *  * ***** *     *      *  * **  *   *  *  *     * *  ** *    *  *** *     *  *  *    ** *:
5y3m_F_1     305:KTTIFNDLTQLRRLNLSFNYHKKVSFAHLHLASSFGSLVSLEKLDMHGIFFRSLTNITLQSLTRLPKLQSLHLQLNFINQAQLSIFGAFPSLLFVDLSDN: 404
SecStr          :H  GGGG TT  EEE TT   TT  BS     GGGGG TT  EEE TTS BSEE TTTTGGGTT TT  EEE  SS   EE GGGGGG SS  EEE  SS:    
ExpBur          :ebebbeebeebeebebbbbbeeeeeeeebebbebbeebeebeebbbbbbbbeebbeebbebbeebeebeebbbbebebeeeebebbeebeebeebbbbeb:    
Contact         :                   bbbbbbbb                      b b                        b                       

queryA       429:RISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKA-------------------------------------------: 485
                :***                                                                                                 :
5y3m_F_1     405:RIS------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCN: 450
SecStr          :   ----------------------------------------------------------------------------------------------  T:    
ExpBur          :ebe----------------------------------------------------------------------------------------------ebe:    

queryA       486:----LDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQ: 581
                :    **** *    *    *  *    ** ** **  *   *  *        ***  * **       ***  ** *******  *   ** * * *  :
5y3m_F_1     451:LNFTLDLSRNNLVTIQQEMFTRLSRLQCLRLSHNSISQAVNGSQFVPLTSLRVLDLSHNKLDLYHGRSFTELPQLEALDLSYNSQPFSMQGVGHNLSFVA: 550
SecStr          :TS EEE  SS  SS  GGGGTT TT  EEE TTS       SSSSTT TT  EEE  SS      TTTTTT TT  EEE TT  TGGGSTT     GGGG:    
ExpBur          :ebbbbbbbebebeebeeebbeebeebebbebbebebebebebebbebbeebebbbbbebebebeeeebbebbeebebbebbebeebbeeeeeebebebbe:    

queryA       582:NFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNW: 681
                :    *  * * ** *        * * **  * **** *   *   *  *   **** **  **** * *         *** **  *   ** * ****:
5y3m_F_1     551:QLPSLRYLSLAHNGIHSRVSQ-KLSSASLRALDFSGNSLSQMWAEGD-LYLCFFKGLRNLVQLDLSENHLHTLLPRHLDNLPKSLRQLRLRDNNLAFFNW: 648
SecStr          :G TT  EEE TTS   SSS S-  EESS  EEE  SS HHHHHTSTT-TTTTTTTEETT  EEE  SS  S   HHHHHTS TT  EEE TT   S   G:    
ExpBur          :ebeebeebbbbebebeeebbe-ebebebbebbbbbbbbbeebbeeee-ebeebbeebeebbebbbbebebeebeeebbebbbebbeebebeebebeebeb:    

queryA       682:TLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIG: 781
                :  *   **** *** ** *  *          *  *  * * *     **      *  * ** * ***   *       * *  *    **  *     :
5y3m_F_1     649:SSLTVLPRLEALDLAGNQLKALSNGSLPPGIRLQKLDVSSNSIGFVIPGFFVRATRLIELNLSANALKTVDPSWFGSLAGT-LKILDVSANPLHCAXXXA: 747
SecStr          :GGGGG TT  EEE TTS   EE SS S TT    EEE TTS   EE TTSSTT TT  EEE  SS  S   GGGTTTHHHH- SEEE  S  EE  --- :    
ExpBur          :ebbeebeebebbbbbbbebebbbeeebbeebebeebbbbebebeebeeebbeebeebeebebbebebeebeeebbeebbee-beebbbbebebebe---e:    

queryA       782:--DFRRWMDEHLNVKIPRLV-DVICASPGDQRGKSIVS: 816
                :  **     *      * *   * * ***   * **  :
5y3m_F_1     748:FVDFLLERQE----AVPGLSRRVTCGSPGQLQGRSIFT: 781
SecStr          :HHHHHHHTGG----GSTTTTTTSBEEESTTSTTSBTT :    
ExpBur          :beebbbeeee----bbebbbeebebbeeeebeeebbbe:

Input Residue Numbers for Focused Sites

ex) 2,15,123