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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [738 aa] | Toll-like receptor 9 :TLR9_BOVIN | |
2 | b | B 1 (E) | polymer(polydeoxyribonucleotide) [4 base] | DNA (5'-D(*TP*CP*GP*T)-3') | 261F(D) 262N(H) 263A 348Y 349I(H) 350K 351G(K) 352S(V) 353Y(S) 354P(F) 355Q(A) 378V(F) 380Q(R) 405F (identity: 28.6 %/35.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5y3m_A_1 identity=35.5% |
queryA 35:PCDEKKQNDSVIAECSNRRLQEVPQ-TVGKY---VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130 :** * * ** * ** * * * * * * * ** ** * * * ** * **: 5y3m_A_1 13:PCELQPHGQ---VDCNWLFLKSVPHFSAGAPRANVTSLSLISNRIHHLHDSDFVHLSNLRVLNLKWN--CPPAGLSPMHFPCRMTIEPNTFLAVPTLEEL: 107 SecStr :TSEEEGGGE---EE TTS SS TTS GGG EEE TT EE TTSSTT TT EEE TTS--B TTTSTT EE TTTTTT TT EE: ExpBur :ebbeeeebe---bbbbeeebeebbebeeebebeebebbbbebbebeebeeebbeebeebeebbbeeb--bbbeebbeeeeebebeeeeebbeebeebeeb: queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229 : * * * ** *** * * * ** *** * * * ** *** * * ** ** ** * *: 5y3m_A_1 108:NLSYNGITTVPALP-SSLVSLSLSHTSILVLGPTHFTGLHALRFLYMDGNCYYMNPCPRALEVAPGALLGLGNLTHLSLKYNNLTEVPRRLPPSLDTLLL: 206 SecStr :E SB S -TT EEE TTSS EE GGGGTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS SS SS TT SEEE : ExpBur :ebbebbbeebbebb-eebbbbbbbbbbbeebbeeebeebeebeebebbbbbbeebebeeebebbeebbeebeebebbbbeebebeebbeebbeebebbbb: queryA 230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGG-ASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIA: 328 :* * ** * * ** *** ** * ** * * * * * * * ** * ** * **** * * * : 5y3m_A_1 207:SYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCRECPKNFPKLHPDTFS--HLSRLEGLVLKDSSLYKLEKDWFRGLGRLQVLDLSENFLYDYIT: 304 SecStr :TTS EE GGGGTT TT EEE SSSB TTS SS B TT EE TTSST--T TT EEE TTS SS GGGGTT TT EEE TTSSTTTHHH: ExpBur :bbbebbebbeebbeebeebeebbbbbbbbbeeeeebeeeebeeeeeebeeebbe--ebeebebbbbebbbbeebeeebbeebeebeebbbbbbbbbebbe: Contact : bbb queryA 329:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSEN: 428 : * * * ***** * * * * ** * * * * * * ** * * *** * * * * ** *: 5y3m_A_1 305:KTTIFNDLTQLRRLNLSFNYHKKVSFAHLHLASSFGSLVSLEKLDMHGIFFRSLTNITLQSLTRLPKLQSLHLQLNFINQAQLSIFGAFPSLLFVDLSDN: 404 SecStr :H GGGG TT EEE TT TT BS GGGTT TT EEE TTS BSEE TTTTGGGTT TT EEE SS EE GGGGGG SS EEE SS: ExpBur :ebebbeebeebeebebbbbbeeeeeeeebebbebbeebeebeebbbbbbbbebbbeebbebbeebeebeebbbbebebeebebebbeebeebeebbbbeb: Contact : bbbbbbbb b b b queryA 429:RISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSA: 528 :*** * * **** * * * * ** ** ** * * * : 5y3m_A_1 405:RISGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXM------PSCN-LNFTLDLSRNNLVTIQQEMFTRLSRLQCLRLSHNSISQAVNGSQFVP: 497 SecStr : ------------------------------------ ------ T-TS EEE SS SS GGGGTT TT EEE TTS SSSSTT: ExpBur :ebeee------------------------------------e------eebe-eebbbbbbebebeebeeebbeebeebebbebbebebebebebebbeb: queryA 529:IPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDD: 628 : *** * ** *** ** ******* * ** * * * * * * ** * * * ** * **** * * *: 5y3m_A_1 498:LTSLRVLDLSHNKLDLYHGRSFTELPQLEALDLSYNSQPFSMQGVGHNLSFVAQLPSLRYLSLAHNGIHSRVSQ-KLSSASLRALDFSGNSLSQMWAEGD: 596 SecStr : TT EEE SS TTTTTT TT EEE TT GGGGSTT GGGGG TT EEE TTS SSS S- EESS EEE SS HHHHHTSTT: ExpBur :beebebbbbbebebebeeeebbbbbeebebbbbbebeebbeeeeeebebebbeebeebeebbbbebebeeebbe-ebebebbebbbbbbbbbeebbeeee: queryA 629:NRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLP: 728 : * **** ** **** * * *** ** * ** * **** * **** *** ** * * * * * * * : 5y3m_A_1 597:-LYLCFFKGLRNLVQLDLSENHLHTLLPRHLDNLPKSLRQLRLRDNNLAFFNWSSLTVLPRLEALDLAGNQLKALSNGSLPPGIRLQKLDVSSNSIGFVI: 695 SecStr :-TTTTTTTEETT EEE SS S HHHHHTS TT EEE TT S GGGGGGSTT EEE TTS EE SS TT EEE SS EE : ExpBur :-ebbbbbeebeebbebbbbebebeebeeebbebbbeebeebebeebebeebebebbeebeebebbbbbbbebebbbeebbbeebebeebbbbebebeebe: queryA 729:SGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIG--DFRRWMDEHLNVKIPRLV-DVICASPGDQRGKSIVS: 816 : ** * * ** * *** * * * * ** * * ** * * * * * *** * ** : 5y3m_A_1 696:PGFFVRATRLIELNLSANALKTVDPSWFGSLAGT-LKILDVSANPLHCACGAAFVDFLLERQE----AVPGLSRRVTCGSPGQLQGRSIFT: 781 SecStr :TTSSTT TT EEE SS S GGGTTTHHHH- SEEE S EE TT THHHHHHHTGG----GSTTTTTTSBEEESTTSTTSBTT : ExpBur :eebbeebeebeebebbebebeebeeebbeebbee-beebbbbebebebeeebebeebbbeeee----bbebbbeebebbbeeeeeeebbbe: |