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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [750 aa] | Toll-like receptor 9 :TLR9_HORSE | |
2 | b | C 2 (E) | polymer(polydeoxyribonucleotide) [6 base] | DNA (5'-D(*GP*CP*GP*CP*AP*C)-3') | 543D 545D(Y) 572G 573V 574T(G) 575H 576H(N) 599L(R) 600T(V) (identity: 44.4 %/36.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5y3k_A_1 identity=36.7% |
queryA 35:PCDEKKQNDSVIAECSNRRLQEVPQTVGKY----VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130 :** * * ** ** * * * * * * * ** * ** * * * ** * **: 5y3k_A_1 13:PCELQPHG---LVNCNWLFLKSVPHFSAAAPRDNVTSLSLLSNRIHHLHDSDFAQLSNLQKLNLKWN--CPPAGLSPMHFPCHMTIEPNTFLAVPTLEEL: 107 SecStr :TSEEETTT---EEE TTS SS TTS TTS EEE TT EE STTTTT TT EEE TTS--B TTTSTT EE TTTTTT TT EE: ExpBur :ebeeeeeb---ebbbeeeebeebbebeeebebeebebbbbebbebeebeeebbeebeebeebebeeb--bbbeebbeeeeebebeeeeebbeebeebeeb: queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229 : * * * ** ** * * ** * * ** *** * * * ** *** * * ** ** ** * *: 5y3k_A_1 108:NLSYNGITTVPA-LPSSLVSLILSRTNILQLDPTSLTGLHALRFLYMDGNCYYKNPCGRALEVAPGALLGLGNLTHLSLKYNNLTTVPRSLPPSLEYLLL: 206 SecStr :E SB SS - TT EEE TTS EE TTTTTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS SS SS TT SEEE : ExpBur :bbbbbbbeebbe-bbeebbbbebbbbebeebeeebbeebeebeebebbbbbbeebeeeeebebeeebbeebeebbbbbbebbebeebbeebbeebeebbb: queryA 230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGG-ASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIA: 328 :* * ** * * ** *** ** * *** * * * * * * * ** * ** * **** * * * : 5y3k_A_1 207:SYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCVECPHKFPQLHSDTFS--HLSRLEGLVLKDSSLYQLNPRWFRGLGNLTVLDLSENFLYDCIT: 304 SecStr : SS EE GGGGTT TT SEEE TTSSB GGG SS B TT EE TTTTT--T TT EEE TTS SS GGGGTT TT EEE TTSS TTHHH: ExpBur :bbbebeebbeebbeebeebebbbbbbbbbbeeeeebeeeebeeeeeebeeebbe--ebeebebbbbebbbbeebeeebbeebeebbebbbbbbbbbebbe: queryA 329:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSEN: 428 : * * * ***** * * * **** * * * * *** ** * * *** * * * * * ** *: 5y3k_A_1 305:KTKAFQGLAQLRRLNLSFNYHKKVSFAHLTLAPSFGSLLSLQELDMHGIFFRSLSQKTLQPLARLPMLQRLYLQMNFINQAQLGIFKDFPGLRYIDLSDN: 404 SecStr :H TTTT TT EEE TT TT BS GGGGG TT EEE TTS BSEE HHHHGGGTT TT EEE SS EE GGGGTT TT EEE SS: ExpBur :ebebbeebeebeebebbbbbeeeeeeeebebbebbeebebbeebbbbbbbbeebeeebbebbbebeebeebbbbebebeebebbbbeebeebebbbbbeb: queryA 429:RISPLVKDTRQSYANSSSFQRHIRKRR----------STDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNA: 518 :*** * * ** * * **** * * * * ** ** ** : 5y3k_A_1 405:RISGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEDF----------------MPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSIS: 488 SecStr : SS ------------------------------ TTT----------------S STTSS EEE SS SS GGGGTT TT SEEE SS : ExpBur :ebebeee------------------------------eeeb----------------beebeebebbbbbbebebeebeeebbeebeebebbebbebebe: queryA 519:QVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGN: 618 :* * * *** * ** *** ** ******* * ** * * * * * * ** * * * ** * ****: 5y3k_A_1 489:QAVNGSQFVPLTSLQVLDLSHNKLDLYHGRSFTELPRLEALDLSYNSQPFSMRGVGHNLSFVAQLPTLRYLSLAHNGIHSRVSQ-QLCSTSLWALDFSGN: 587 SecStr : S SSTT TT EEE SS STTTTTT TT EEE S HHHHHSTT GGGGG TT EEE TTS SSS S- EESS EEE SS: ExpBur :bebebebbeebeebbbbbbbebebebeeeebbebbeebebbbbbebeebbeeeeeebebebbeebeebebbbbbebebbeebbe-ebebebbebbbbbbb: Contact : b b bbbbb bb queryA 619:RLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLL: 718 : * * * * * ** * ***** *** *** ** * * * **** * * ** *** ** * * * * : 5y3k_A_1 588:SLSQMWAEGD-LYLRFFQGLRSLIRLDLSQNRLHTLLPCTLGNLPKSLQLLRLRNNYLAFFNWSSLTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLD: 686 SecStr : HHHHHHSTT-SSTTTTTEETT EEE SS S HHHHHTS TT EEE TT GGGGGGSTT EEE TTS SEE SS S TT EEE: ExpBur :bbeebbeeee-ebeebbbbbeebebbbbbebebeeeeeebbbbbbeebebbbbeebebeebebebbeebeebebbbbbbbebebbbeeebbeebebeebb: queryA 719:LSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVK--IPRLVD-VICASPGDQRGKSIV: 815 : * * * ** * * ** * * * * * * ** * * * * * * * * * *** * ** : 5y3k_A_1 687:VSRNSIIFVVPGFFALATRLRELNLSANALRTVEPSWFGFLAGS-LEVLDVSANPLHCACGAA----FVDFLLQVQAAVPGLPSRVKCGSPGQLQGRSIF: 781 SecStr : TTS EE TTSSTT TT EEE SS S GGGGTT GGG- SEEE S EE TT H----HHHHHHHTGGGSTTHHHH BEEESGGGBTSBTT: ExpBur :bbebebeebeeebbeebeebeebebbebebeebeeebbbeebee-beebbbbebebebeeeee----bbebbbebeebbebbbbebebebeeeeeeebbb: queryA 816:SLEL: 819 : *: 5y3k_A_1 782:AQDL: 785 SecStr :SS : ExpBur :eeeb: |