Protein Model on 5y3j_A_1_D_2 (TEMPLATE: 5y3j )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [750 aa] Toll-like receptor 9 :TLR9_HORSE
2 b D 2 (E) polymer(polydeoxyribonucleotide) [6 base] DNA (5'-D(*TP*CP*GP*CP*AP*C)-3') 543D 545D(Y) 572G 573V 574T(G) 575H 599L(R) 600T(V) (identity: 50.0 %/36.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5y3j_A_1 identity=36.7%
queryA        35:PCDEKKQNDSVIAECSNRRLQEVPQTVGKY----VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**            *    *  **          ** * *  * * *     *  * ** * **  *         *        *    **    * **:
5y3j_A_1      13:PCELQPHG---LVNCNWLFLKSVPHFSAAAPRDNVTSLSLLSNRIHHLHDSDFAQLSNLQKLNLKWN--CPPAGLSPMHFPCHMTIEPNTFLAVPTLEEL: 107
SecStr          :TSEEETTT---EEE TTS  SS     TTS GGG  EEE TT    EE TTSSTT TT  EEE TTS--B  TTTSTT      EE TTTTTT TT  EE:    
ExpBur          :ebeeeeeb---ebebeeeebeebbebeeebebeebebbbbebbebeebeeebbeebeebeebebeeb--bbbeebbeeeeebebeeeeebbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229
                : *  *     *  ** **  * *   **          *  *  **   ***    *        *    * **  ***  * *  **  ** **  * *:
5y3j_A_1     108:NLSYNGITTVPA-LPSSLVSLILSRTNILQLDPTSLTGLHALRFLYMDGNCYYKNPCGRALEVAPGALLGLGNLTHLSLKYNNLTTVPRSLPPSLEYLLL: 206
SecStr          :E  SB  SS   -  TT  EEE TTS   EE TTTTTT TT  EEE   SSBTTB  SS  EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE :    
ExpBur          :bbbbbbbeebbe-bbeebebbebbbbebbebeeebbeebeebeebebbbbbbeebeeeeebebeeebbeebeebbbbbbeebebeebbeebbeebeebbb:    

queryA       230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGG-ASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIA: 328
                :*   *     **   *  *  **  *** **  *  *** *         * *    *  *  * *   **   *  **     * ****  * *   * :
5y3j_A_1     207:SYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCVECPHKFPQLHSDTFS--HLSRLEGLVLKDSSLYQLNPRWFRGLGNLTVLDLSENFLYDCIT: 304
SecStr          :TTS   EE GGGGTT TT SEEE TTSS  GGG SS      TT  EE TTTTT--T TT  EEE  SS  SS  GGGGTT TT  EEE TTSS TTGGG:    
ExpBur          :bbbebeebbbebbeebeebeebbbbbbbbbeeeeeeeeeebeeeeeebeeebbe--ebeebebbbbebbbbeebeeebbeebeebbebbbbbbbbbebbe:    

queryA       329:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSEN: 428
                :       *  *  * ***** *     *      *  ****  *   *  *  *     ***  ** *    *  *** *     *  *  *  * ** *:
5y3j_A_1     305:KTKAFQGLAQLRRLNLSFNYHKKVSFAHLTLAPSFGSLLSLQELDMHGIFFRSLSQKTLQPLARLPMLQRLYLQMNFINQAQLGIFKDFPGLRYIDLSDN: 404
SecStr          :T  TTTT TT  EEE TT   TT  BS     GGGGG TT  EEE TTS BSEE HHHHGGGTT TT  EEE  SS   EE GGGGTT SS  EEE  SS:    
ExpBur          :ebebbeebeebeebebbbbbeeeeeeeebebbebbeebeebeebbbbbbbbebbeeebbebbbebeebeebbbbebebeebebbbbeebeebebbbbbeb:    

queryA       429:RISPLVKDTRQSYANSSSFQRHIRKRR----------STDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNA: 518
                :***  *                               * **                 * *      **** *      *  *  *    ** ** **  :
5y3j_A_1     405:RISGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEDF----------------MPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSIS: 488
SecStr          :   SS  ------------------------------ TTT----------------S  STTSS EEE  SS  SS  GGGGTT TT SEEE TTS   :    
ExpBur          :ebeeeee------------------------------eeeb----------------bebbeebebbbbbbebebeebeeebbeebeebebbebbebebe:    

queryA       519:QVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGN: 618
                :*   *  *        ***  * **       ***  ** *******  *   ** * * *      *  * * ** *        * * **  * ****:
5y3j_A_1     489:QAVNGSQFVPLTSLQVLDLSHNKLDLYHGRSFTELPRLEALDLSYNSQPFSMRGVGHNLSFVAQLPTLRYLSLAHNGIHSRVSQ-QLCSTSLWALDFSGN: 587
SecStr          :    SSSSTT TT  EEE  SS     STTTTTT TT  EEE TT HHHHTSTT     GGGGG TT  EEE TTS   SSS S-  EESS  EEE  SS:    
ExpBur          :bebebebbeebeebebbbbbebebebeeeebbebbeebebbbbbebeebbeeeeeebebebbeebeebebbbbbebebbeebbe-ebebebbebbbbbbb:    
Contact         :                        b b                          bbbb                       bb                  

queryA       619:RLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLL: 718
                : *   *   *  *   * **  * ***** ***         *** **  *    * * ****  *   * ** *** ** *  *          *  * :
5y3j_A_1     588:SLSQMWAEGD-LYLRFFQGLRSLIRLDLSQNRLHTLLPCTLGNLPKSLQLLRLRNNYLAFFNWSSLTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLD: 686
SecStr          : HHHHHTSTT-TTTTTTTEETT  EEE  SS  S   HHHHTTS TT  EEE TTS      GGGGGGSTT  EEE TTS   EE SS S TT    EEE:    
ExpBur          :bbeebbeeee-ebeebbbbbeebebbbbbebebeeeeeebbbbbbeebebbebeebebeebebebbeebeebebbbbbbbebebbbeeebbeebebeebe:    

queryA       719:LSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVK--IPRLVD-VICASPGDQRGKSIV: 815
                : * * *     **      *  * ** * * *   *         *  *    **  * *         *  * *    * *   * * ***   * ** :
5y3j_A_1     687:VSRNSIIFVVPGFFALATRLRELNLSANALRTVEPSWFGFLAGS-LEVLDVSANPLHCACGAA----FVDFLLQVQAAVPGLPSRVKCGSPGQLQGRSIF: 781
SecStr          : TTS   EE TTTTTT TT  EEE  SS  S   GGGGTT GGG- SEEE  S  EE  TT H----HHHHHHHTGGG TTHHHH BEEESGGGTTSBTT:    
ExpBur          :bbebebeebeeebbeebeebeebebbebebeebeeebbbeebee-beebbbbebebebeeebe----bbebbbebeebbebbbeebebebeeebeeebbb:    

queryA       816:SLEL: 819
                :   *:
5y3j_A_1     782:AQDL: 785
SecStr          :SS  :    
ExpBur          :eeeb:

Input Residue Numbers for Focused Sites

ex) 2,15,123