Protein Model on 5ijd_A_1_U_1
(TEMPLATE: 
5ijd
)Protein Model on 5ijd_A_1_U_1
(TEMPLATE: 5ijd
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [590 aa] | Toll-like receptor 4, Variable lymphocyte receptor B chimera :TLR4_MOUSE:Q4G1L2_EPTBU | |
| 2 | b | U 1 (D) | non-polymer(LP5) | (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE | 570I(S) 598T(R) 602K(F) 603Y(S) (identity: 0.0 %/29.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5ijd_A_1 identity=29.2% |
queryA 259:RCFNAPFPCVPCDGGASI-NID----------RFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF--LTMLPRLEILDLS: 345
: * ** * * *** * * * * ** * ** * * * * * ** * * :
5ijd_A_1 13:QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK: 111
SecStr :E S SS SSS TT EEE S EE TTTTSS S EEE TT EE TT S S SS EEE TT - SSSS TT EEE TTS :
ExpBur :ebeeeeeeebbeebeeebeebbbbebebeebeeeebeebeebeebbbbebebeebeeebbeebeebbebbbebbe-beebeebbbbebeebebbbbbebe:
queryA 346:FNYIKGSYP-------QHINISRNF----------SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLS-TINLGINFIKQIDFKLFQNFSNLEIIYLSE: 427
: * * * ** * * * * * * * * * * * * ** * :
5ijd_A_1 112:LASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN: 210
SecStr : ST-T S TT EEE SS SGGGT TT EEE SS EE TTTTHHHHT TT EE TT EE TTTTTT EEEEEEEES :
ExpBur :beebe-ebebeebebbeebebbebebeebebbebbeebeebeebbbbebebeebeeebbebbeebeebebbbbbbebebeebeeebbeebebebbbbeeb:
queryA 428:NRISPLVKDTRQSYANSSSFQRHIRKRRSTDFE-------FDP-----------------HSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQF: 501
: * * * * * * * * * * * * * * * ** * *:
5ijd_A_1 211:FNSSNIMKTCLQNLAG-----LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN--DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF: 303
SecStr : SSHHHHHHHHHTTTT----- EEEEEEEE TTS S GGGGTTSTTSEEEEEEE S--S GGGGG GGGTT SEEEEES TT :
ExpBur :beeeeebeebbebbeb-----bebeebbbbbeeeeeebeebebebbebbeebebeebebbbbe--ebeeebbebebbbebebbbbebbebeebeebeeeb:
queryA 502:E-----------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQN: 582
: ** * * * * * **** * * * * * **** * * :
5ijd_A_1 304:KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMG: 393
SecStr : SEEEEES SS TT EEEEES SS B --- TT EEE SS BEEEE SHHHH S EEE S SEEEE S ------- TT:
ExpBur :ebeebbbeebebeebbebebeebeebbbbebeeebebeeb---ebeebeebbbbebebebeebbbeebbbbeebebbbbbebeebebebe-------beb:
Contact : b
queryA 583:FTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNW: 681
: * * * * ** * *** ** ** * * * * * * ** * * *:
5ijd_A_1 394:LEELQHLDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISW: 486
SecStr : TT EEE TTSEEESTTTTTTT--TT TT E----EE TTS EE GGGGTT TT EEE TT EEGGGEE STTTT- SEEE TTS EE S:
ExpBur :beebeebbbeebebeebbeebbb--ebbeebee----bbbbebebebeeebbbebbeebebbebbbbbbeeeebbebbee-beebeebbbbebebeebee:
Contact : b bb
queryA 682:TLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIG: 781
: ** ** * **** * ** * * * * * ** ** ** * * :
5ijd_A_1 487:GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLKELALDTNQLKSVPDGIFDRLTSLQK--------------------------IWLHTNPWDCSCPRI: 560
SecStr :STTTT TT EEE SS TTTTTT TT EEE SS TTTTTT TT E--------------------------EE SS B TTTT:
ExpBur :bbbeebeebebbebbebebeebeeebbeebeebeebbbbebebebbeeebbeebeebee--------------------------bebeebebeeeeeeb:
queryA 782:DF-RRWMDE: 789
:* ** :
5ijd_A_1 561:DYLSRWLNK: 569
SecStr :HHHHHHHHH:
ExpBur :ebbbebbee:
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[assembly_id:1]
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