Protein Model on 5ijc_C_1_I_1 (TEMPLATE: 5ijc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) C 1 (B) polymer(polypeptide(L)) [593 aa] Toll-like receptor 4,Variable lymphocyte receptor B :TLR4_MOUSE:Q4G1L2_EPTBU
2 b I 1 (I) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 270C(D) 285N (identity: 50.0 %/29.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5ijc_C_1 identity=29.1%
queryA       259:RCFNAPFPCVPCDGGASI-NID----------RFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF--LTMLPRLEILDLS: 345
                : *       ** *   *  ***             * *   *  * **      *         **  * *  *        * *  ** *  *      :
5ijc_C_1      54:QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK: 152
SecStr          :E TTS  SS  S S TT  EEE TT    EE TTTTTT TT  EEE TT    EE TTTTSS TT  EEE TT  -     TTTTTT TT  EEE TTS :    
ExpBur          :ebeeeebeebbeebeeebeebbbbebebeebeeeebeebeebeebbbbebebeebeeebbebbeebbebbbebbe-beebeeebbeebeebebbbbbebe:    
Contact         :           b                         b                                                              

queryA       346:FNYIKGSYP-------QHINISRNF----------SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLS-TINLGINFIKQIDFKLFQNFSNLEIIYLSE: 427
                :      * *          *   **          * *  *    *     *     * * *   *          * *  *    **     *      :
5ijc_C_1     153:LASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN: 251
SecStr          :   ST-T   TT TT  EEE  SS        GGGGS TT  EEE  SS   EE TTTTHHHHH TT   EEE TT    EE TTSSTT EEEEEEEES :    
ExpBur          :beebe-ebebbebeebeebebbebebeebebbebbeebeebebbbbbebebeebeeebbebbeeeeeeebbbbbbbbebeebeeebbeebebebbbbebb:    

queryA       428:NRISPLVKDTRQSYA----------------NSSSFQRHIRKRRSTDFEFDPHSNFY--HFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQFE-----: 502
                :   *   *   *  *                *   *   *      *   *     *   *     *  * *   *  *   **      *  *      :
5ijc_C_1     252:FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL-CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS: 350
SecStr          : SSHHHHHHHHHTTTT EEEEEEEE  TTS   S   GGGGTTG-GGSEEEEEEE   SS  TTSTT GGGTT SEEEEES          TT    EEE:    
ExpBur          :beeeeebeebbebbbebebebbbbbbeeeeebbeebeeebbebb-eebebeebebbbbeebeeebbebebbbebebbbbbbbebeebeebeeebebeebb:    

queryA       503:------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKV: 588
                :             **    * *  *            * *   ****  * * *        *    *  **** *      *              *  :
5ijc_C_1     351:IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMGLEELQH: 440
SecStr          :EES   SS      SS  EEEEES SS  B    ---  TT  EEE  SS  BEEEE  GGGT  S   EEE  S SEEEE S ------- TT TT  E:    
ExpBur          :beebebeebbebebeebeebbbbebeeebebeeb---ebeebeebbbbebebebeebbbeebbbbeebeebbbbebeebebebe-------bebbeebee:    

queryA       589:LNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQF: 687
                :*   *      *        **  *      ***           ** **  *  *    *  *       * *    ** *      *    *      :
5ijc_C_1     441:LDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFDTL: 533
SecStr          :EE TTSEEESGGGTTTT--TT TT  E----EE TTS  EE  TTTTTT TT  EEE TT EEGGGEE S  TT- TT  EEE TTS   EE TTTTTT :    
ExpBur          :bbbeebebeebbeebbb--ebbeebeb----bbbbebebebeeebbbebbeebebbebbebbbeeeebbebbee-beebbebbbbebebeebeebbbeeb:    

queryA       688:PRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDF-RRW: 786
                : ** **    * ****  *      **  * *  *     * *      **                              ** **  * *   *   **:
5ijc_C_1     534:HRLQLLNMSHNNLLFLDSSHYNQLYSLKELALDTNQLKSVPDGIFDRLTSLQK--------------------------IWLHTNPWDCSCPRIDYLSRW: 607
SecStr          :TT  EEE  SS      GGGGSS TT  EEE  SS      TTTTTT TT  E--------------------------EE  SS B   TTTSHHHHHH:    
ExpBur          :eebebbebbebebeebeebbbeebebbeebbbbebebebbeeebbeebeebee--------------------------bebeebebeeeeeebebbbeb:    

queryA       787:MDE: 789
                :   :
5ijc_C_1     608:LNK: 610
SecStr          :HHH:    
ExpBur          :bee:

Input Residue Numbers for Focused Sites

ex) 2,15,123