Protein Model on 5ijc_A_1_F_1 (TEMPLATE: 5ijc )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [589 aa] Toll-like receptor 4,Variable lymphocyte receptor B :TLR4_MOUSE:Q4G1L2_EPTBU
2 b F 1 (F) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 672N(S) 673D(K) 694D(N) 696R(S) 697G(H) 716T(E) 768E(W) (identity: 0.0 %/29.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5ijc_A_1 identity=29.7%
queryA       222:SSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFN: 321
                :* *  * **   *  *      **  *  * * **    *                     *  ** *  *    * *             ** *    *:
5ijc_A_1      93:SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-----------------SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN: 175
SecStr          :TT  EEE TT    EE TTTTTT TT  EEE TT TT    TT-----------------TTTT TT  EEE TTS    STT S TT TT  EEE  SS:    
ExpBur          :eebeebbbbebebeebeeebbebbeebbebbbebbebeebeee-----------------bbeebeebebbbbbebebeebeebebbebeebeebebbeb:    

queryA       322:YLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISR-----NFSKLLSLRALH-LRGYVFQELREDDFQPLMQLPNLSTI------NLGINFIKQI: 409
                :         *    *  *   *** ***           *     * *   **          **         *    * * *      **        :
5ijc_A_1     176:F-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT-LRGNFNSSNIMKTCLQNLAGLHVHRL: 273
SecStr          : -       GGGGT TT  EEE  SS   EE TTTTHHHHH TT   EEE TT    EE TTTTTTEEEEEEE-EES  SSHHHHHHHHHTTTTEEEEEE:    
ExpBur          :e-beebebbebbeebeebeebbbbebebeebeeebbebbeeeeebebbbbbbebebeebeeebbeebebebbb-bebbbeebeebeebbebbbbbebebb:    

queryA       410:DFKLFQNFSNLEIIYLS--ENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQFE---: 502
                :    *    ****   *  *          *  * *                          *     *  * *   *  *   **      *  *    :
5ijc_A_1     274:ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND-------------------------FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS: 348
SecStr          :EEE  TTS   S   GGGGGGGGSSEEEEEEE   SS-------------------------  TTGGG GGGTT SEEEEES          TT   SE:    
ExpBur          :bbbbeeeeeebeebeeebbebbeebebeebebbebee-------------------------beeebbebebbbebebbbbbebebeebeebeeebebee:    

queryA       503:--------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNL: 586
                :               **    * *  *            * *   ****  * * *        *    *  **** *      *              *:
5ijc_A_1     349:LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMGLEEL: 438
SecStr          :EEEES   SS      TT  EEEEES SS  B    ---  TT  EEE  SS  BEEEE SGGGT  S   EEE  S SEEEE   ------- TT TT :    
ExpBur          :bbbeebebeebbebebeebeebbbbebeeebebeeb---ebeebeebbbbebebebebbbbeebbbbeebeebbbbebeebebeee-------bebbeeb:    

queryA       587:KVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNWTLLQ: 685
                :  *   *      *        **  *      ***           ** **  *  *    *  *       * *    ** *      *    *    :
5ijc_A_1     439:QHLDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFD: 531
SecStr          : EEE TTSEEESGGGTTTT--TT TT  E----EE TTS  EE  TTTTTT TT  EEE TT EEGGGEE S  TT- TT  EEE TTS   EE TTTTT:    
ExpBur          :eebbbeebebeebbeebbb--ebbeebee----bbbbebebebeeebbbebbeebebbebbebbbeeebbbebbee-beebbebbbbebebeebeebbbe:    
Contact         :                                                                                      bb            

queryA       686:QFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDF-R: 784
                :   ** **    * ****  *      **  * *  *     * *      **                              ** **  * *   *   :
5ijc_A_1     532:TLHRLQLLNMSHNNLLFLDSSHYNQLYSLKELALDTNQLKSVPDGIFDRLTSLQK--------------------------IWLHTNPWDCSCPRIDYLS: 605
SecStr          :T TT  EEE  SS      GGGGTT TT  EEE  SS  S   TTTTTT TT  E--------------------------EE  SS B   TTTTHHHH:    
ExpBur          :ebeebebbebbebebeebeeebbbebeebeebbbbebebebbeeebbeebeebee--------------------------bebeebebebeeeebebbb:    
Contact         :        b bb                  b                                                   b                 

queryA       785:RWMDE: 789
                :**   :
5ijc_A_1     606:RWLNK: 610
SecStr          :HHHHH:    
ExpBur          :ebbee:

Input Residue Numbers for Focused Sites

ex) 2,15,123