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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [589 aa] | Toll-like receptor 4,Variable lymphocyte receptor B :TLR4_MOUSE:Q4G1L2_EPTBU | |
2 | b | D 1 (D) | polymer(polypeptide(L)) [136 aa] | Lymphocyte antigen 96 :LY96_MOUSE | 572G(N) 581Q(M) 600T 601D(E) 608K(L) 609S 630R(D) 631Y(F) 632I(D) (identity: 22.2 %/29.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5ijc_A_1 identity=29.7% |
queryA 222:SSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFN: 321 :* * * ** * * ** * * * ** * * ** * * * * ** * *: 5ijc_A_1 93:SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-----------------SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN: 175 SecStr :TT EEE TT EE TTTTTT TT EEE TT TT TT-----------------TTTT TT EEE TTS STT S TT TT EEE SS: ExpBur :eebeebbbbebebeebeeebbebbeebbebbbebbebeebeee-----------------bbeebeebebbbbbebebeebeebebbebeebeebebbeb: queryA 322:YLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISR-----NFSKLLSLRALH-LRGYVFQELREDDFQPLMQLPNLSTI------NLGINFIKQI: 409 : * * * *** *** * * * ** ** * * * * ** : 5ijc_A_1 176:F-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT-LRGNFNSSNIMKTCLQNLAGLHVHRL: 273 SecStr : - GGGGT TT EEE SS EE TTTTHHHHH TT EEE TT EE TTTTTTEEEEEEE-EES SSHHHHHHHHHTTTTEEEEEE: ExpBur :e-beebebbebbeebeebeebbbbebebeebeeebbebbeeeeebebbbbbbebebeebeeebbeebebebbb-bebbbeebeebeebbebbbbbebebb: queryA 410:DFKLFQNFSNLEIIYLS--ENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQFE---: 502 : * **** * * * * * * * * * * * ** * * : 5ijc_A_1 274:ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND-------------------------FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS: 348 SecStr :EEE TTS S GGGGGGGGSSEEEEEEE SS------------------------- TTGGG GGGTT SEEEEES TT SE: ExpBur :bbbbeeeeeebeebeeebbebbeebebeebebbebee-------------------------beeebbebebbbebebbbbbebebeebeebeeebebee: queryA 503:--------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNL: 586 : ** * * * * * **** * * * * * **** * * *: 5ijc_A_1 349:LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMGLEEL: 438 SecStr :EEEES SS TT EEEEES SS B --- TT EEE SS BEEEE SGGGT S EEE S SEEEE ------- TT TT : ExpBur :bbbeebebeebbebebeebeebbbbebeeebebeeb---ebeebeebbbbebebebebbbbeebbbbeebeebbbbebeebebeee-------bebbeeb: Contact : b b queryA 587:KVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNWTLLQ: 685 : * * * ** * *** ** ** * * * * * * ** * * * : 5ijc_A_1 439:QHLDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFD: 531 SecStr : EEE TTSEEESGGGTTTT--TT TT E----EE TTS EE TTTTTT TT EEE TT EEGGGEE S TT- TT EEE TTS EE TTTTT: ExpBur :eebbbeebebeebbeebbb--ebbeebee----bbbbebebebeeebbbebbeebebbebbebbbeeebbbebbee-beebbebbbbebebeebeebbbe: Contact : bb bb bbb queryA 686:QFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDF-R: 784 : ** ** * **** * ** * * * * * ** ** ** * * * : 5ijc_A_1 532:TLHRLQLLNMSHNNLLFLDSSHYNQLYSLKELALDTNQLKSVPDGIFDRLTSLQK--------------------------IWLHTNPWDCSCPRIDYLS: 605 SecStr :T TT EEE SS GGGGTT TT EEE SS S TTTTTT TT E--------------------------EE SS B TTTTHHHH: ExpBur :ebeebebbebbebebeebeeebbbebeebeebbbbebebebbeeebbeebeebee--------------------------bebeebebebeeeebebbb: queryA 785:RWMDE: 789 :** : 5ijc_A_1 606:RWLNK: 610 SecStr :HHHHH: ExpBur :ebbee: |