Protein Model on 5hdh_A_1_D_1 (TEMPLATE: 5hdh )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [751 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b D 1 (D) branched(oligosaccharide) alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 476K 478Q 534Y 560D 588V 590N 612E 614V (identity: 100.0 %/94.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5hdh_A_1 identity=94.9%
queryA        33:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLL: 132
                :********************************************************************            ********************:
5hdh_A_1       7:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLL: 106
SecStr          :  SSEEEE SSSEEEE  SS  SS  S   SS SEEE  SS   EE TTTS S  S  EEE  S S  ------------  EE TTTTTT SS  EEE :    
ExpBur          :eebbeeeeeeeeeebebbebebeebbeeeeeebeebebbebebeebeeebbeebeebbbbebbebeee------------ebebeebbbeebeebeebbb:    

queryA       133:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 232
                :****************************************************************************************************:
5hdh_A_1     107:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 206
SecStr          : SS  SS  SS  S  SEEE  SS   EE TTTTTT  S SEEE  SSS S SS S  EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE  SS:    
ExpBur          :bebebeebbeebbebbebbbbbebbbeebeeebbbebeebeebebbebbbbeeebeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbb:    

queryA       233:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 332
                :****************************************************************************************************:
5hdh_A_1     207:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 306
SecStr          :   EE TTTTTT TT  EEE TTSS    S  TT    GGG   EE TTTTTT TT  EEE  SS  S   GGGGTT TT  EEE  SS  HHHHHH GG:    
ExpBur          :ebeebeeebbeebeebbbbbbbbbbbbbeeeeeeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbbbbbbebbeebeb:    

queryA       333:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 432
                :****************************************************************************************************:
5hdh_A_1     307:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 406
SecStr          :GGG TT  EEE  S   TTB  SB    GGGGG TT  EEE TT   SEE GGGGGGGTT TT  EEE  S    EE GGGGGG SS  EEE  S     :    
ExpBur          :beebeebbebbbbbbbeeeebeeebebbeebbebeebebbbbbbbbbbebeeebbebbbebeebebbbbbbbebeebebebbeebeebebbbbbebebeb:    

queryA       433:LVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 532
                :**        *********           **********************************************************************:
5hdh_A_1     407:LVXXXXXXXXNSSSFQRHIXXXXXXXXXXXPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 506
SecStr          :  --------  B      -----------    SSS  S SS HHHHTTS EEE  SS  SS  TTTTTT    SEEE  SS       S TTTTSTT :    
ExpBur          :ee--------eeeeebeee-----------eeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbbbebebebebebbeebeeb:    
Contact         :                                           b b                                                      

queryA       533:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 632
                :****************************************************************************************************:
5hdh_A_1     507:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 606
SecStr          :SEEE  SS      TTTTTT TT  EEE  S  HHHHSTT     GGGGG SS  EEE TTS     SS    EESS  EEE TTS HHHHHHSSSSTTT:    
ExpBur          :ebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebbbeebbeeeebebebbeebbbbbbbbbebbeeeeeebb:    
Contact         : b                         b                           b b                     b b                  

queryA       633:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 732
                :****************************************************************************************************:
5hdh_A_1     607:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 706
SecStr          :TTTTEETT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S GGGT SS  EEE  SS      S   :    
ExpBur          :ebbeebeebeebebbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebebbbbebbebeebbeebeebbebbebbbbbebebeebbebbe:    

queryA       733:SEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTCV: 823
                :   *********************      *************************************************************:
5hdh_A_1     707:XXXSSLKHLDLSSNLLKTINKSALXXXXXXKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTCV: 797
SecStr          :---    EEE  SS  S       ------  SEEE TT  EE STTHHHHHHHHHH TTSB S TTT BEEESTTTTT BTTT  GGGG :    
ExpBur          :---eebeebbbbebebebbeeeee------eeeebbbbebebebeeebeebeebbeeeeebebeeebebebeeeeebeeebbbebeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123