Protein Model on 5gs0_A_1_B_1 (TEMPLATE: 5gs0 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [663 aa] Toll-like receptor 3 :TLR3_HUMAN
2 b B 1 (C) polymer(polypeptide(L)) [107 aa] light chain (anti-TLR3) 101Q(K) 141P(S) 142S(D) 143G(A) 144L(F) 162T(K) 163K(N) 164E(N) 168R(K) (identity: 0.0 %/31.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5gs0_A_1 identity=31.1%
queryA        46:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 142
                : * **   *  **       * * *  *         *     **      *         *                *  *  * *  * * *      :
5gs0_A_1       8:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQK-----------LPMLKVLNLQHNELSQLSDKTF:  93
SecStr          :EEE  SS  SS  S S TT SEEE  SS      GGGGSS TT SEEE  SS      ---HHHHHT----------- TT  EEE  SSS     TTSS:    
ExpBur          :ebebbeeeeeebbeebeeebeebebbebebeebebeebeebeebeebebbebebeebe---eebbee-----------beebebbbbeebebeebeeebb:    
Contact         :                                                       b                                       bbb  

queryA       143:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 241
                :     **** *  * *  *         **  * *  *     *       *      * *     *    *        *** ** **  ***  *   :
5gs0_A_1      94:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQIKEFSPGC: 190
SecStr          :TT  S SEEE  SS      S TTTT TT  EEE  SS   S    SS   TT  EEE  SS    B HHHHGGGTT--- EESEEE TT     B TTT:    
ExpBur          :bebeebeebbbbebebeebeebbbbebeebebbbbbebbbeebebbeeebbeebeebbbbebebebbeeebbebbee---bebeebbbbebebeebbeeb:    
Contact         :bb                 bbb   b                                                                          

queryA       242:FKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIASGAFLTMLPRL: 339
                :*     *  * *                   * *           *  * * **   *       *       *  ***  * *            ** *:
5gs0_A_1     191:FHAIGRLFGLFLNN--------------VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQL: 274
SecStr          :TTTSSEE EEE  S--------------    HHHHHHHHHHHTTS   EEE TT    EE TTTT GGGGS   EEE  SS  -- EE TTTTTT SS :    
ExpBur          :bebbeebebbbbbe--------------bebbeebbeebbebbbebebeebbbbebebeebeeebbebbeebebbbbbbbebeb--eebeeebbbebbeb:    

queryA       340:EILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS-: 431
                :*   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **    **    * :
5gs0_A_1     275:EYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL: 367
SecStr          : EEE  S  B-----  B- GGGGTT  S  EEE TT B   SSSSS S  B TTT-TTT SS  EEE  S  B    TTTTTT TT  EEE TT BS  :    
ExpBur          :eebebbebeb-----eeb-eeebbebbeebeebbbeebbbeeeeeeeeebebeeeb-bebbebbeebbbeebebeebeeebbeebeebeebbbbebbeeb:    

queryA       432:-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIF-FIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAI: 529
                :  *   *  * * *        *      * *  *   *                *** ** *           *  *    ** *   * *    *   :
5gs0_A_1     368:RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-------------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALV: 453
SecStr          : EE TTGGGGGTTS   EEE TTS   EE TTTTTT TT ------------- EEE  SS  EEEE S TTTT SS  EEE  S SEEE-E SSTTTT :    
ExpBur          :eebeeebbebbeebebeebbbbebebeebeeebbeebeeb-------------ebbebbebebebebebebbeebeebeebebbebeebe-beeebbeeb:    

queryA       530:PHVKYLDLTNNRLDFDNA----SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWN: 625
                :*    * *   *    *     *    *  *  **** *            **       *  * * ***   *    *                     :
5gs0_A_1     454:PSLQRLML--RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHAN---------------------: 524
SecStr          :TT  EEE --TTS  B    SS TTTT TT  EEE  SS      TTTTTT T------T  EEE  S  TTGGGSTTS---------------------:    
ExpBur          :eebeebbb--eebebeebebeebbbeebeebbbbbbbebebeebeeebbebbe------ebeebbbbebebbebbeeeb---------------------:    

queryA       626:DDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRIS: 725
                :      *   ***  *  * *  *    ** * *      * ** * *                                             *  *   :
5gs0_A_1     525:--PGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------------------LGLNNLN: 573
SecStr          :--TTS   TTTT TT  EEE  SS      TTTT----TT TT  EEE---------------------------------------------  SS   :    
ExpBur          :--eeebbebbeebeebeebbbbebebeebbeebb----bebeebeebb---------------------------------------------bbebebe:    

queryA       726:HLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGDQRG: 811
                : **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     *  *    *:
5gs0_A_1     574:TLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPHYHG: 659
SecStr          :   TTTTTT  S  EEE  SS      HHHH-HHHHTS SEEE  S  EE SHHHHHHHHHHHHH-  SB TTHHHH BEEESTT SS:    
ExpBur          :ebeeebbeebeebebbbbbebebebbeeebb-bebbeebeebbbbebebebeeebbeebbebbee-eebebeebeeebebeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123