[pdbjlvh2]Protein Model on 5gmf_A_1_J

Protein Model on 5gmf_A_1_J_1 (TEMPLATE: 5gmf )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [776 aa]	Toll-like receptor 7 :B3Y653_MACMU
2	b		J 1 (J)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	181C 182Y 186V(P) 187C 188E(Y) 189K(V) 190T(S) 212S(N) (identity: 37.5 %/41.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5gmf_A_1 identity=41.5%

queryA        30:FSRSYPCDEK--KQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNL: 127
                :*    ***         **  *    * * *       * * *  * *  *   **  *  *  *    *                * *    *  *  *:
5gmf_A_1       8:FPKTLPCDVTLDVSKNHVIVDCTDKHLTEIPGGIPTNTTNLTLTINHIPDISPASFHRLVHLVEIDFRCNCVPIRLGSKSNMCPRRLQIKPRSFSGLTYL: 107
SecStr          :S TT SSEEEEETTTTEEEEE TTS  SS  TT  TT  EEE  S    EE TTTTSS TT SEEE   SS  TTTS SSS   S  EE TTSSTT TT :    
ExpBur          :eeeebebeeeeeeeeebbebebbeeebeebbeebbeebbbbbbbebebeebbeebbeebeebbbbbbbbbbbbeeebeeeeebeeebeeeeebbeebeeb:    

queryA       128:RELLLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRK: 226
                :  * *  ***  ** *** **  ***  ***  * **    * *   ***  ***    *     **   *  ** *  ***  *    **  *** *  :
5gmf_A_1     108:KSLYLDGNQLLEIPQGLPPSLQLLSLEANNIFSIRKEQLTELANIEILYLGQNCYYRNPCYVSYSIEKDAFLNLTKLKVLSLKDNNVTTVPTVLPSTLTE: 207
SecStr          : EEE  SS  SS   S  TT  EEE TTSS  EE GGGGTT TT  EEE  SSSBTTB  SS  EE TTTTTT TT  EEE  SS   S  SS  TT SE:    
ExpBur          :ebbbbbbbbbeebbeebbeebebbbbbbbbbeebeeebbeebeebeebebbbbbbeebebeeebeeeeebbeebeebebbbbbbbebeebbeebbebbbe:    
Contact         :                                                     bb   bbbbb                      b              

queryA       227:LFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGE: 326
                :* * *  *  * * **  *  *  ********** ****** **       *   **  ** *  * * * **      ****   *  ***  * *  *:
5gmf_A_1     208:LYLYNNMIAEIQEDDFNNLNQLQILDLSGNCPRCYNAPFPCTPCKNNSPLQIPVNAFDALTELKVLRLHSNSLQHVPPRWFKNINNLQELDLSQNFLAKE: 307
SecStr          :EE  SS   B  TTTTTT TT  EEE TTSS   TT SS     GGG   B  TTTTTT TT  EEE TTS  S   GGGGTT     EEE  SSS HHH:    
ExpBur          :bbbbbbebeebeeebbeebeebebbbbbbbbbbeeeeebeeeeeeeeeebebeeebbeebeebebbbbbbbbbeebeeebbeebeebeebbbbbbebbeb:    

queryA       327:IASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLS: 426
                :*    **  ** *  ******     *    * *  ** * **  *  ***** **      **  * **    ** ****      *  *  *  * **:
5gmf_A_1     308:IGDAKFLHFLPNLIQLDLSFNFELQVYRASMNLSQAFSSLKSLKILRIRGYVFKELKSFQLSPLHNLQNLEVLDLGTNFIKIANLSMFKQFKRLKVIDLS: 407
SecStr          :HHH GGGGG TT  EEE  S   TT  EEE    GGGGG TT  EEE TT  EEEE GGGGGGGTT TT  EEE  SS   EE GGGGGGGTT SEEE  :    
ExpBur          :beebebbeebeebeebbbbbbbeeeeebebbebbebbeebeebeebbbbbbbbeebeeebbebbbebeebebbbbbbbebeebebbbbeebeebebbbbb:    

queryA       427:ENRISPLVKDTRQSYANSSSFQRHIRKRRSTD----FEFDPHSNFYHF-----TRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSN: 517
                : * ***                              *  *       *             *  **  **** ******    *  *    ***** *  :
5gmf_A_1     408:VNKISPXXXXXXXXXXXXXXXXXXXXXXXVLEQLYYFRYDKYARSCRFKXXXXXXXXXXXSCYKYGQTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLI: 507
SecStr          :S     -----------------------   SS SS S TT   SS  -----------  GGGS EEE  SS      GGGGTT TT SEEE TTS  :    
ExpBur          :ebebee-----------------------eeeeebbeeebbeeeeeeee-----------ebeeeeebbbbbebebeebebeebeebebbbbbbbbebeb:    

queryA       518:AQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSG: 617
                : * * * **       ***  *****     *  **  ***** * *****   * ** * *  *   *  *    * *   *     ** **  * * *:
5gmf_A_1     508:SQTLNGSEFQPLAELRYLDFSNNRLDLLHSTAFEELRKLEVLDISSNSHYFQSEGITHMLNFTKNLKVLQKLMMNDNDISSSTSR-TMESESLRTLEFRG: 606
SecStr          :     S SSTT TT  EEE  SS      TTTTTT TT  EEE TT  GGGGSTT    GGGGGG TT  EEE TT      SSS-  EESS  EEE TT:    
ExpBur          :ebebebebbebbeebebbbbbebebbbeeeebbebbeebebbbbbebeeebeeeeeebbbebbeebeebeebbbbebebeebebe-ebebebbebbbbeb:    

queryA       618:NRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTL: 717
                :* ** ** * ****   ** *  *  ** * * *   *   *   *  *  *    * ** * *  *     ** ***  * *      **    **  *:
5gmf_A_1     607:NHLDVLWRDGDNRYLQLFKNLLKLEELDISKNSLSFLPSGVFDGMPPNLKNLSLAKNGLKSFIWEKLRYLKNLETLDLSHNQLTTVPERLSNCSRSLKNL: 706
SecStr          :S HHHHT TT  TTTTTTTEETT  EEE  SS  S   TTTTTTS TT  EEE  SS      GGGGGG TT  EEE  SS      S GGGT SS  EE:    
ExpBur          :bebeebbeeeeeebbebbeebeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebeebeebeebebbebbebebeebbeebbebbeebeeb:    

queryA       718:LLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLV-DVICASPGDQRGKSIVS: 816
                : *  * *  *   **     *  ******    * *          * ** ** * * ****   *  *   *  * ** *  ** *  **   * *  *:
5gmf_A_1     707:ILKNNQIRSLTKYFLQDAFQLRYLDLSSNKIQMIQKTSFPENVLNNLKMLLLHHNRFLCTCDAVWFVWWV-QHTEVTIPYLATDVTCVGPGAHKGQSVIS: 805
SecStr          :E  SS      TTTTTT TT  EEE TTS      TTTS HHHHTT SEEE  S  EE SGGGHHHHHHH-HH  S  TTHHHH BEEESGGGTT BGGG:    
ExpBur          :bbeebebeebbeebbeebeebeebbbbebbbeebeeebbbeebbeebeebbbbebebebeeebebbbebb-eebebebeebeeebebebeeeeeeeebbe:    

queryA       817:LELTTC: 822
                :* * **:
5gmf_A_1     806:LDLYTC: 811
SecStr          :   TT :    
ExpBur          :bebeee:

Protein Model on 5gmf_A_1_J_1 (TEMPLATE: 5gmf )

Input Residue Numbers for Focused Sites