Protein Model on 5gmf_A_1_H_1
(TEMPLATE: 
5gmf
)Protein Model on 5gmf_A_1_H_1
(TEMPLATE: 5gmf
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [776 aa] | Toll-like receptor 7 :B3Y653_MACMU | |
| 2 | b | H 1 (H) | polymer(polyribonucleotide) | RNA (5'-R(P*UP*UP*UP*U)-3') | 72D(I) 74F(H) 95N(R) 96H(C) 99N(V) 103Q(L) 104N(G) 105G(S) 108G(N) 133E(D) 154I(E) 155Q(A) 179W(Q) 182Y 184N(R) 460E(R) 461F(Y) 462D 465S(A) 466N(R) 467F(S) 468Y(C) (identity: 9.1 %/41.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5gmf_A_1 identity=41.5% |
queryA 30:FSRSYPCDEK--KQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNL: 127
:* *** ** * * * * * * * * * * ** * * * * * * * * *:
5gmf_A_1 8:FPKTLPCDVTLDVSKNHVIVDCTDKHLTEIPGGIPTNTTNLTLTINHIPDISPASFHRLVHLVEIDFRCNCVPIRLGSKSNMCPRRLQIKPRSFSGLTYL: 107
SecStr :S TT SSEEEEETTTTEEEEE TTS SS TT TT EEE S EE TTTTSS TT SEEE SS TTTS SSS S EE TTSSTT TT :
ExpBur :eeeebebeeeeeeeeebbebebbeeebeebbeebbeebbbbbbbebebeebbeebbeebeebbbbbbbbbbbbeeebeeeeebeeebeeeeebbeebeeb:
Contact : b b bb b bbb b
queryA 128:RELLLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRK: 226
: * * *** ** *** ** *** *** * ** * * *** *** * ** * ** * *** * ** *** * :
5gmf_A_1 108:KSLYLDGNQLLEIPQGLPPSLQLLSLEANNIFSIRKEQLTELANIEILYLGQNCYYRNPCYVSYSIEKDAFLNLTKLKVLSLKDNNVTTVPTVLPSTLTE: 207
SecStr : EEE SS SS S TT EEE TTSS EE GGGGTT TT EEE SSSBTTB SS EE TTTTTT TT EEE SS S SS TT SE:
ExpBur :ebbbbbbbbbeebbeebbeebebbbbbbbbbeebeeebbeebeebeebebbbbbbeebebeeebeeeeebbeebeebebbbbbbbebeebbeebbebbbe:
Contact : b bb b b b
queryA 227:LFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGE: 326
:* * * * * * ** * * ********** ****** ** * ** ** * * * * ** **** * *** * * *:
5gmf_A_1 208:LYLYNNMIAEIQEDDFNNLNQLQILDLSGNCPRCYNAPFPCTPCKNNSPLQIPVNAFDALTELKVLRLHSNSLQHVPPRWFKNINNLQELDLSQNFLAKE: 307
SecStr :EE SS B TTTTTT TT EEE TTSS TT SS GGG B TTTTTT TT EEE TTS S GGGGTT EEE SSS HHH:
ExpBur :bbbbbbebeebeeebbeebeebebbbbbbbbbbeeeeebeeeeeeeeeebebeeebbeebeebebbbbbbbbbeebeeebbeebeebeebbbbbbebbeb:
queryA 327:IASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLS: 426
:* ** ** * ****** * * * ** * ** * ***** ** ** * ** ** **** * * * * **:
5gmf_A_1 308:IGDAKFLHFLPNLIQLDLSFNFELQVYRASMNLSQAFSSLKSLKILRIRGYVFKELKSFQLSPLHNLQNLEVLDLGTNFIKIANLSMFKQFKRLKVIDLS: 407
SecStr :HHH GGGGG TT EEE S TT EEE GGGGG TT EEE TT EEEE GGGGGGGTT TT EEE SS EE GGGGGGGTT SEEE :
ExpBur :beebebbeebeebeebbbbbbbeeeeebebbebbebbeebeebeebbbbbbbbeebeeebbebbbebeebebbbbbbbebeebebbbbeebeebebbbbb:
queryA 427:ENRISPLVKDTRQSYANSSSFQRHIRKRRSTD----FEFDPHSNFYHF-----TRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSN: 517
: * *** * * * * ** **** ****** * * ***** * :
5gmf_A_1 408:VNKISPXXXXXXXXXXXXXXXXXXXXXXXVLEQLYYFRYDKYARSCRFKXXXXXXXXXXXSCYKYGQTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLI: 507
SecStr :S ----------------------- SS SS S TT SS ----------- GGGS EEE SS GGGGTT TT SEEE TTS :
ExpBur :ebebee-----------------------eeeeebbeeebbeeeeeeee-----------ebeeeeebbbbbebebeebebeebeebebbbbbbbbebeb:
Contact : bbb bbbb
queryA 518:AQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSG: 617
: * * * ** *** ***** * ** ***** * ***** * ** * * * * * * * * ** ** * * *:
5gmf_A_1 508:SQTLNGSEFQPLAELRYLDFSNNRLDLLHSTAFEELRKLEVLDISSNSHYFQSEGITHMLNFTKNLKVLQKLMMNDNDISSSTSR-TMESESLRTLEFRG: 606
SecStr : S SSTT TT EEE SS TTTTTT TT EEE TT GGGGSTT GGGGGG TT EEE TT SSS- EESS EEE TT:
ExpBur :ebebebebbebbeebebbbbbebebbbeeeebbebbeebebbbbbebeeebeeeeeebbbebbeebeebeebbbbebebeebebe-ebebebbebbbbeb:
queryA 618:NRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTL: 717
:* ** ** * **** ** * * ** * * * * * * * * * ** * * * ** *** * * ** ** *:
5gmf_A_1 607:NHLDVLWRDGDNRYLQLFKNLLKLEELDISKNSLSFLPSGVFDGMPPNLKNLSLAKNGLKSFIWEKLRYLKNLETLDLSHNQLTTVPERLSNCSRSLKNL: 706
SecStr :S HHHHT TT TTTTTTTEETT EEE SS S TTTTTTS TT EEE SS GGGGGG TT EEE SS S GGGT SS EE:
ExpBur :bebeebbeeeeeebbebbeebeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebeebeebeebebbebbebebeebbeebbebbeebeeb:
queryA 718:LLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLV-DVICASPGDQRGKSIVS: 816
: * * * * ** * ****** * * * ** ** * * **** * * * * ** * ** * ** * * *:
5gmf_A_1 707:ILKNNQIRSLTKYFLQDAFQLRYLDLSSNKIQMIQKTSFPENVLNNLKMLLLHHNRFLCTCDAVWFVWWV-QHTEVTIPYLATDVTCVGPGAHKGQSVIS: 805
SecStr :E SS TTTTTT TT EEE TTS TTTS HHHHTT SEEE S EE SGGGHHHHHHH-HH S TTHHHH BEEESGGGTT BGGG:
ExpBur :bbeebebeebbeebbeebeebeebbbbebbbeebeeebbbeebbeebeebbbbebebebeeebebbbebb-eebebebeebeeebebebeeeeeeeebbe:
queryA 817:LELTTC: 822
:* * **:
5gmf_A_1 806:LDLYTC: 811
SecStr : TT :
ExpBur :bebeee:
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[assembly_id:1]
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