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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [709 aa] | Toll-like receptor 13 :TLR13_MOUSE | |
2 | b | N 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 291Y(H) 315V(N) 340E(K) 341I(S) (identity: 0.0 %/31.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4z0c_A_1 identity=31.5% |
queryA 137:LPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS--NTQI: 234 :* * * * * * * * * * * * ** * * * * ** ** * * * * **: 4z0c_A_1 26:LTEAISDIPRYTTHLNLTHNEIQVLPPWSFTNLSALVDLRLEWNSIWK-------IDEGAFRGLENLTLLNLVENKIQSVNNSFEGLSSLKTLLLSHNQI: 118 SecStr :HHHHHTTS TT EEE SS EE TTTTTT TT EEE SS E-------E TTTTTT TT EEE SS EE S TT TT EEE SS : ExpBur :beebbeebbeebeebebbebebeebeeebbeebeebebbebeebebee-------beebbbeebeebeebbbbebebeebeebbebbeebebbebbebeb: queryA 235:KYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCV---PCDGGASINIDRFAF-----QNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGE: 326 : * * ** * * ** * * * ** * * * ** * * * * * : 4z0c_A_1 119:THIHKDAFTPLIKLKYLSLSRNNISDFSGILEAVQHLPCLERLDLTNNSIMYLDHSPRSLVSLTHLSFEGNKLRELNFSAL-SLPNLTNLSASRNG--NK: 215 SecStr : EE TTTTTT TT EEE SS HHHHHHHHTT SS EEE SS S EE SS EEE TTS S EE TTE-E TT EEE S --SS: ExpBur :eebeeebbebbeebeebbbbebebeebeebbebbbebeebeebebbebebeebbeeebebeebbebbbebbebebbbbebb-ebeebbebbbbebe--ee: Contact : b b queryA 327:IASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDF------QPLMQLPNLSTINL--------GINFIKQIDFK: 412 : * ** * * ** ** * * * *** * *** * ** * * ** : 4z0c_A_1 216:VIQNVYLKTLPQLKSLNLSGTVIKLE-----NLSA--KHLQNLRAMDLSNW---ELRHGHLDMKTVCHLLGNLPKLETLVFQKNVTNAEGIKQLAKCTRL: 305 SecStr : B EE TT TT EEE TT B GG-----GS G--GGGTT EEE S---SGGG HHHHHHHHTT TT EEE SS HHHHHHHHHH : ExpBur :ebeebebebbeebeebebbbbebebe-----ebeb--eebeebebbbbbbe---eeeeeebebeebbebbeebeebeebbbbebbbeeebbeebbeebeb: Contact : bb queryA 413:LFQNFS-NLEIIYLSENRISPL-------VKDTRQSYANS---SSFQR-------HIRKRRSTDFEFDP--HSNFYHFTR-PLIKPQCAAYG-----KAL: 486 :** * *** * * * ** * * ** * * * * * * * * *: 4z0c_A_1 306:LFLDLGQNSDLIYLNDSEFNALPSLQKLNLNKCQLSFINNRTWSSLQNLTSLDLSHNKFKSFPDFAFSPLKHLEFLSLSRNPITELNNLAFSGLFALKEL: 405 SecStr :SEEE TT TT EE S TTTT TT SEEE TTS EE TTTSTT TT EEE SS S TTTTTT TT EEE TT S GGGGTT TT EE: ExpBur :eebbbbebeebeebeeebbeebebbeebbbbebebeebbeebbeebeebebbbbbebebeebeeebbbbbeebeebbbbebbbeebeeebbebbeebeeb: queryA 487:DLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNS-HYFRIAGVTHHLEFIQNFTN: 585 : * * * * * * * * * * * * * * * * * *** *** ** * : 4z0c_A_1 406:NLAACWIVTIDRYSFTQFPNLEVLDLGDN-NIRTLNHGTFRPLKKLQSLILSHNCLKILEPNSFSGLTNLRSLDLMYNSLSYF-------HEHLFSGLEK: 497 SecStr :E TTS TTSSTT TT EEE TTS- EE TTTTTT TT EEE TTS EE TTTTTT TT EEE SS ------- TTTTTT TT: ExpBur :bbbbbebeebeeebbeebeebeebebbeb-ebeebeebbbeebeebeebebbebebeebeeebbbbbeebebbbbbebbbeeb-------eeebbeebee: queryA 586:LKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNR--LKHIPNEAFLNLPASLTELHINDNMLKFFNWTL: 683 :* * * * * * * * * ** * * * * * * * ** ** * * : 4z0c_A_1 498:LLILKLGFNKITYET------TRTL-------------------QYPPFIK-LKSLKQLNLEGQRHGIQVVPSNFFQGL-GSLQELLLGKNPSVFLDHHQ: 570 SecStr : EEE SS BSS------ -------------------SS TTTT- TT EEE TT TT EE TTTTTT -TT EEE TT S EEE S T: ExpBur :beebebbebebebee------eeeb-------------------eebbbee-beebeebbbbbbeebbbbbbebbbeeb-ebbeebbbbebebbebeeeb: queryA 684:LQQFPRLELLDLRGNK----LLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD: 779 : * ** * * * * ** * * * * * * ** * * ** ** * * * * ** ****: 4z0c_A_1 571:FDPLINLTKLDISGTKDGDRSLYLNASLFQNLKRLKILRLENNNLESLVPDMFSSLQSLQVFSLRFNNLKVINQSHL--KNLKSLMFFDVYGNKLQCTCD: 668 SecStr :TTT TT EEE SHHHHEEE TTTTTT TT EEE SS S TTSSTT TT EEE SS TTTT--TT TT EEE TTS SSGG: ExpBur :beebeebebbbbbbbeebeebbebbeebbeebeebebbbbeebebeebeeebbbebeebebbbbeebbbeebeeebb--eebeebebbbbeebebebeee: queryA 780:IGDFRRWMDEHLNVKIPRLVDVICASPGDQ: 809 : * * * ** * * ** *: 4z0c_A_1 669:NLWFKNWSMNTEEVHIPFLRSYPCQQPGSQ: 698 SecStr :GHHHHHHHHH SS B TTGGG B SSTT : ExpBur :bbebbeebeebeebbbbbbeebebeeeeee: |