Protein Model on 4z0c_A_1_E_1 (TEMPLATE: 4z0c )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [709 aa] Toll-like receptor 13 :TLR13_MOUSE
2 b E 1 (E) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 150E(H) 152S(N) 154I(T) 174N(D) 176Y(R) (identity: 0.0 %/31.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4z0c_A_1 identity=31.5%
queryA       137:LPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS--NTQI: 234
                :*    *  *   * * *  * *          *  *  * * **           *  * *  * ** ** *  *    *            *     **:
4z0c_A_1      26:LTEAISDIPRYTTHLNLTHNEIQVLPPWSFTNLSALVDLRLEWNSIWK-------IDEGAFRGLENLTLLNLVENKIQSVNNSFEGLSSLKTLLLSHNQI: 118
SecStr          :HHHHHTTS TT  EEE  SS   EE TTTTTT TT  EEE  SS   E-------E TTTTTT TT  EEE  SS   EE S  TT TT  EEE  SS  :    
ExpBur          :beebbeebbeebeebebbebebeebeeebbeebeebebbebeebebee-------beebbbeebeebeebbbbebebeebeebbebbeebebbebbebeb:    
Contact         :             b b b                   b b                                                            

queryA       235:KYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCV---PCDGGASINIDRFAF-----QNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGE: 326
                :  *    *  ** *  * ** *    *      *   **                    *  *  *      **  *       * *  *    *     :
4z0c_A_1     119:THIHKDAFTPLIKLKYLSLSRNNISDFSGILEAVQHLPCLERLDLTNNSIMYLDHSPRSLVSLTHLSFEGNKLRELNFSAL-SLPNLTNLSASRNG--NK: 215
SecStr          : EE TTTTTT TT  EEE  SS    HHHHHHHHTT SS  EEE  SS       S EE SS  EEE TTS  S EE TTE-E TT  EEE  S  --SS:    
ExpBur          :eebeeebbebbeebeebbbbebebeebeebbebbbebeebeebebbebebeebbeeebebeebbebbbebbebebbbbebb-ebeebbebbbbebe--ee:    

queryA       327:IASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDF------QPLMQLPNLSTINL--------GINFIKQIDFK: 412
                :      *  ** *  * **   **       * *     *  ***  *      ***            *  ** * *           **         :
4z0c_A_1     216:VIQNVYLKTLPQLKSLNLSGTVIKLE-----NLSA--KHLQNLRAMDLSNW---ELRHGHLDMKTVCHLLGNLPKLETLVFQKNVTNAEGIKQLAKCTRL: 305
SecStr          : B  EE TT TT  EEE TT  B GG-----GS G--GGGTT  EEE   S---SGGG    HHHHHHHHTT TT  EEE  SS   HHHHHHHHHH   :    
ExpBur          :ebeebebebbeebeebebbbbebebe-----ebeb--eebeebebbbbbbe---eeeeeebebeebbebbeebeebeebbbbebbbeeebbeebbeebeb:    

queryA       413:LFQNFS-NLEIIYLSENRISPL-------VKDTRQSYANS---SSFQR-------HIRKRRSTDFEFDP--HSNFYHFTR-PLIKPQCAAYG-----KAL: 486
                :**     *   ***       *             *  *    ** *        *       ** * *  *  *    * *       *       * *:
4z0c_A_1     306:LFLDLGQNSDLIYLNDSEFNALPSLQKLNLNKCQLSFINNRTWSSLQNLTSLDLSHNKFKSFPDFAFSPLKHLEFLSLSRNPITELNNLAFSGLFALKEL: 405
SecStr          :SEEE TT TT  EE S TTTT TT SEEE TTS   EE TTTSTT TT  EEE  SS  S   TTTTTT TT  EEE TT    S  GGGGTT TT  EE:    
ExpBur          :eebbbbebeebeebeeebbeebebbeebbbbebebeebbeebbeebeebebbbbbebebeebeeebbbbbeebeebbbbebbbeebeeebbebbeebeeb:    

queryA       487:DLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNS-HYFRIAGVTHHLEFIQNFTN: 585
                : *    *  *    *   *    * *  * *   *    *        * *  * *          *  *  *** ***  **       *         :
4z0c_A_1     406:NLAACWIVTIDRYSFTQFPNLEVLDLGDN-NIRTLNHGTFRPLKKLQSLILSHNCLKILEPNSFSGLTNLRSLDLMYNSLSYF-------HEHLFSGLEK: 497
SecStr          :E TTS      TTSSTT TT  EEE TTS-   EE TTTTTT TT  EEE TTS   EE TTTTTT TT  EEE  SS     ------- TTTTTT TT:    
ExpBur          :bbbbbebeebeeebbeebeebeebebbeb-ebeebeebbbeebeebeebebbebebeebeeebbbbbeebebbbbbebbbeeb-------eeebbeebee:    

queryA       586:LKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNR--LKHIPNEAFLNLPASLTELHINDNMLKFFNWTL: 683
                :*  * *  * *   *         *                    *    * ** *  * *   *      *   *  *  ** **    *   *     :
4z0c_A_1     498:LLILKLGFNKITYET------TRTL-------------------QYPPFIK-LKSLKQLNLEGQRHGIQVVPSNFFQGL-GSLQELLLGKNPSVFLDHHQ: 570
SecStr          :  EEE  SS   BSS------    -------------------SS TTTT- TT  EEE TT TT  EE  TTTTTT -TT  EEE TT S EEE S T:    
ExpBur          :beebebbebebebee------eeeb-------------------eebbbee-beebeebbbbbbeebbbbbbebbbeeb-ebbeebbbbebebbebeeeb:    

queryA       684:LQQFPRLELLDLRGNK----LLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD: 779
                :      *  **  * *     * *  **      *  * *  *    *     *   **    *  * ** ** * *  *    *      **   ****:
4z0c_A_1     571:FDPLINLTKLDISGTKDGDRSLYLNASLFQNLKRLKILRLENNNLESLVPDMFSSLQSLQVFSLRFNNLKVINQSHL--KNLKSLMFFDVYGNKLQCTCD: 668
SecStr          :TTT TT  EEE     SHHHHEEE TTTTTT TT  EEE  SS   S  TTSSTT TT  EEE  SS      TTTT--TT TT  EEE TTS   SSGG:    
ExpBur          :beebeebebbbbbbbeebeebbebbeebbeebeebebbbbeebebeebeeebbbebeebebbbbeebbbeebeeebb--eebeebebbbbeebebebeee:    

queryA       780:IGDFRRWMDEHLNVKIPRLVDVICASPGDQ: 809
                :   *  *      * ** *    *  ** *:
4z0c_A_1     669:NLWFKNWSMNTEEVHIPFLRSYPCQQPGSQ: 698
SecStr          :GHHHHHHHHH SS B TTGGG B SSTT  :    
ExpBur          :bbebbeebeebeebbbbbbeebebeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123