Protein Model on 4r09_A_1_G_1 (TEMPLATE: 4r09 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [749 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b G 1 (G) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 478Q 534Y 558V 560D 562S 588V 590N 612E 614V (identity: 100.0 %/95.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4r09_A_1 identity=95.1%
queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :**********   ********************************************************            *******************:
4r09_A_1      10:RSYPCDEKKQXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELL: 109
SecStr          :  SSSEEE  --- EEE  SS  SS  S   TT SEEE TTS   EE TTTTSS TT  EEE  S S  ------------  EE TTTTTT SS  EEE:    
ExpBur          :eeebbebeee---eebebeebebeebbeebbeebeebebbebebeebeeebbeebeebeebbbbebeee------------ebebeeebbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
4r09_A_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE  SS   EE HHHHTT TT SEEE  SSS TT      EE TTTTTT TT  EEE  SS  SS  S   TT SEEE TT:    
ExpBur          :bbbbebeebbeebbebbbbbbbbbbebbebeeebbbebeebebbebbbbbbeeeeeeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
4r09_A_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE TTTTTT TT  EEE TTSS   TT SS     STT   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHS G:    
ExpBur          :bebeebbeeebeebeebebbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebeebeebbbbebebbebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
4r09_A_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG TT  EEE  S   SS   SB    GGGGG TT  EEE TT   SEE GGGGGGGTT TT  EEE  SS   EE GGGGGG SS  EEE  SS   :    
ExpBur          :bbeebeebbebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbbebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebebe:    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :**                        **************************************************************************:
4r09_A_1     410:PLXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          :  ------------------------  SS TTS SSS  S SS HHHHTTS EEE  SS   S  TTTTTT    SEEE  SS       S TTTTSTT:    
ExpBur          :be------------------------eeeeebeeeebeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebeeebbeebee:    
Contact         :                                              b                                                     

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
4r09_A_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          : SEEE  S       TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TTS     SS    EESS  EEE  SS HHHHT TT  TT:    
ExpBur          :bebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebebbebbbeebeeeeebebebbeebbbbbbbbeebbeeebeeb:    
Contact         :  b                       b b b                         b b                     b b                 

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
4r09_A_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTEETT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S GGGT S   EEE  SS      TTT:    
ExpBur          :bebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebebbbbeebebeebbeebeebbebbebbbbbebebeebbebb:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLEL: 819
                :****************************************************************************************:
4r09_A_1     710:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLEL: 797
SecStr          :TSS TT  EEE  SS      GGGT  SS     EEE TT  EE SGGGHHHHHHHHT TTSB   GGGSBEEESTTTTTSBTTS   :    
ExpBur          :bbebebbeebbbbebebebbeeebbeeeeebebeebbbeebebebeeebbebbebbeeeeebebeebbebebeeeeebeeebbeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123