[pdbjlvh2]Protein Model on 4qc0_A_1_J

Protein Model on 4qc0_A_1_J_1 (TEMPLATE: 4qc0 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [746 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		J 1 (A)	non-polymer(XG1)	2-butyl-2H-pyrazolo[3,4-c]quinolin-4-amine	543D 545D 572G 573V 574T (identity: 100.0 %/94.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4qc0_A_1 identity=94.7%

queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :**********   ********************************************************            *******************:
4qc0_A_1      10:RSYPCDEKKQXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELL: 109
SecStr          :  SSSEEE  --- EEE  SS  SS  S   TT  EEE  SS   EE SSTTTT TT  EEE  S S  ------------  EE TTTTTT TT  EEE:    
ExpBur          :eeebbbeeee---ebbebeebebeebbeebeeebeebebbebebeebeeeebeebeebbebbbbebeee------------ebebeebbbeebeebebbb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
4qc0_A_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE TTS   EE HHHHTT TT SEEE  SSS TT S    EE TTTTTT TT  EEE  SS  SS  S   TT SEEE TT:    
ExpBur          :bbebebeebbeebbeebbebbbbebebbebbeebbbebeebebbebbbbbeeeeeeeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
4qc0_A_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE SSTTTT TT  EEE TTSS   TT SS    SGGG   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHS G:    
ExpBur          :bebeebbeeebeebeebebbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebebbeebeebebbbbbebebbebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
4qc0_A_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE GGGGGGGTT TT  EEE  SS   EE GGGGGGSS   EEE  SS   :    
ExpBur          :bbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebeebbbbebebe:    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :*                           ************************************************************************:
4qc0_A_1     410:PXXXXXXXXXXXXXXXXXXXXXXXXXXXEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          : ---------------------------   TTS SSS  S SS HHHHTTS EEE  SS   S  TTTTTT    SEEE  SS       S TTTTSTT:    
ExpBur          :e---------------------------eeeeeeebbeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee:    

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
4qc0_A_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          :  EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TTS     SS     BSS  EEE  SS HHHHT TT  TT:    
ExpBur          :bebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebebbebebeebbeeeebebebbeebbbbbbbbeebbeeebeeb:    
Contact         :           b b                          bbb                                                         

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
4qc0_A_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S GGGT SS  EEE  SS      TTS:    
ExpBur          :bebbeebeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbeebbebbebbebbbbbebebeebbeeb:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLEL: 819
                :****************************************************************************************:
4qc0_A_1     710:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLEL: 797
SecStr          :STT  S  EEE  SS      HHHH   S     EEE TT  EE SGGGHHHHHHHHHTTTSB   GGGSBEEESTTTTT BGGGS  :    
ExpBur          :beebebbeebbbbebebebbeeebbbeeeeeebeebbbbebebebeeebbbbbebbeeeeebebbebbbbebbeeeeeeeebbeebee:

Protein Model on 4qc0_A_1_J_1 (TEMPLATE: 4qc0 )

Input Residue Numbers for Focused Sites