Protein Model on 4oqt_A_1_D_1
(TEMPLATE: 
4oqt
)Protein Model on 4oqt_A_1_D_1
(TEMPLATE: 4oqt
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [475 aa] | Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 :LIGO1_HUMAN | |
| 2 | b | D 1 (B) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 268V(T) 269P(H) 291Y(F) 293N 295S 296S(Y) 321N(Q) (identity: 28.6 %/31.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4oqt_A_1 identity=31.9% |
queryA 36:CDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDN: 135
:* * * * * ** *** * * * * ** * * * *** ** *** * * *:
4oqt_A_1 7:CECSAQDRAVL--CHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-----------IVSA---VEPGAFNNLFNLRTLGLRSN: 90
SecStr : EEETTTTEEE-- S SS S TT SEEE SS EE TTSSTT TT EEE SS----------- E---E TTTTTT TT EEE SS:
ExpBur :beeeeeeebbe--beeeebeebbeebeeebeebbbbebebeebeeeebeebeebeebbbbeb-----------bbee---beebbbeebeebebbbbeeb:
queryA 136:QLPQIPSGL---PESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLF---L: 229
: * ** * ** * * * * *** * * * * * ** * * * * * * * *:
4oqt_A_1 91:RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-------DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL: 183
SecStr : S TTSSTT TT B SS EE TTTTTT TT EEEE T-------T EE TTSSTT TT EEEEES SS HHHHTT TT EEEE:
ExpBur :ebeebeebbbeebeebbebbbbebebeebeeebbeebeebebbebbbe-------ebeebbeebbbebeebeebbbbebebeebbbebbbbbebbebbeb:
queryA 230:SNTQIKYISEEDFKGLINLTLLDLS---------GNCPRCFN-APFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLE: 319
: * * ** * * * * ** * * * * * ** **** * * *:
4oqt_A_1 184:RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA---VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ----E: 276
SecStr :ES EE TT S S TT EEEEE TT EE TTSSTT SEEEEESS SS--- HHHHTT TT EEE SS EE TTSSTT TT ----E:
ExpBur :eebebebbeeebbeebeebeebebbebeebeebeebbbeebebebbbbbebebee---bbbebbeebeebeebebbebebebbeeeebeebeebe----e:
Contact : bb b b bb
queryA 320:FNYLVGEIA: 328
: * *:
4oqt_A_1 277:IQLVGGQLA: 285
SecStr :EE SS :
ExpBur :bbbbebebe:
Contact : b
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[assembly_id:1]
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