Protein Model on 4lxs_A_1_H_1 (TEMPLATE: 4lxs )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [747 aa] Protein toll :TOLL_DROME
2 b H 1 (F) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 479C(T) 505P(T) 506D(N) (identity: 0.0 %/28.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4lxs_A_1 identity=28.9%
queryA       390:LMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYH-FTRPLIKPQCAAYGKALDL: 488
                :*    ***   *  * *      **    *** *    *         **         * *             **  *  *           *   * :
4lxs_A_1     143:LTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKL-------RQ-------MPRGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATSVLG--IDI: 225
SecStr          :TTT  S  EEEEES -     GGGTTS TT  EEE TTS  ------- S-------  SS TTT TT  EEE  SS   S  GGGGTT SS  E--EE :    
ExpBur          :beebeebebbbbebe-beebeeebbebbeebeebbbbebeb-------ee-------bbeebbeebeebeebebeebebeebeeebbeebeebeb--bbb:    
Contact         :                                                                                          b         

queryA       489:SLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLD--------FDNASALTEL---SDLEVLDLSYNSHYFRIAGV----: 573
                :  * *       *  *      *****       *  *    *     * ***          * *   *  *     *  *      *   *       :
4lxs_A_1     226:HDNGIEQLPHDVFAHLTNVTDINLSANLFRSLPQGL-FDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQILRLRAELQSLPGDLFEHSTQITNISLGD: 324
SecStr          : SS      TTTTTT TT  EEE TTS  S   TTT-TTT TT  EEEE   SS   B  TTTTTT TT  EEEE S   B  GGGGTT TT  BEE  S:    
ExpBur          :eebebeebeeebbbebeebbebbbbbbebeebeebb-beebeebebbebeebebebeebeeebbbebeebeebebebebeebbeebbeebeebbebebbe:    
Contact         :                bb                                                                                  

queryA       574:----THHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTEL: 669
                :    *          **  * ** *    * *        *  *    * *     *       **  * **  *  * ***  *   **      *  *:
4lxs_A_1     325:NLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNLLTGISGD-------IFSNLGNLVTLVMSRNRLRTIDSRAFVST-NGLRHL: 416
SecStr          :S  SB  GGGGSS TT  EEE  SS   B  TTTTSS TT  EEE  SS      SS-------TTTT SS  EEE  SS      SGGGSS -TT  EE:    
ExpBur          :bebeebeeebbeebeebeebbbbebebeebeeebbeebeebeebebbebebeebebe-------bbeebeebebbbbbebebeebeeebbeeb-ebbeeb:    

queryA       670:HINDN-----------MLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLK-HLDLSSNLLKTI---NKS: 754
                :*   *           **             *  * ** *   *           ** * ** * ** *    *   *    *     *    *      :
4lxs_A_1     417:HLDHNDIDLQQPLLDIMLQTQINSPFGYMHGLLTLNLRNNSIIFVYNDWKNTMLQLRELDLSYNNISSLGYEDLAFLSQNRLHVNMTHNKIRRIALPEDV: 516
SecStr          :E  SS   TT  HHHHHTT     TTTT TT  EEE TTS   S  THHHHT SS  EEE TTS   EEETTTT     S EEEE TTS   EEE     :    
ExpBur          :ebbebebebebeeeebeeeeeeebbbeebebbbbbbbeebebbbbbbbbbeebeebeebbbbebebeebbeebbebebebebebebbebebeebebeeee:    

queryA       755:ALETKTTTKLSMLELHGNPFECTCDI--------GDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTCV: 823
                :         *    *  **  * * *        *               ***   *  *    *      *  *  :
4lxs_A_1     517:XXXXXXXXXLVHVDLNDNPLVCDCTILWFIQLVRGVHKPQYSRQFKLRTDRLV---CSQPNVLEGTPVRQIEPQTLI: 590
SecStr          :--------- EEEE  S   B SGGGHHHHHHHSSS   SGGGGEEEE TT B---  BSTTTTT BTTT  TTS E:    
ExpBur          :---------ebebbbbebebbbebebbebbbbbeeebebebbeebebebeebe---beeeeebeeeebeebebeebe:

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