[pdbjlvh2]Protein Model on 4lxr_A_1_N

Protein Model on 4lxr_A_1_N_1 (TEMPLATE: 4lxr )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [755 aa]	Protein toll :TOLL_DROME
2	b		N 1 (A)	non-polymer(EPE)	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	404N 427E(S) 428N 429R(K) 465S 466N 467F(Q) (identity: 57.1 %/28.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4lxr_A_1 identity=28.9%

queryA       390:LMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYH-FTRPLIKPQCAAYGKALDL: 488
                :*    ***   *  * *      **    *** *    *         **         * *             **  *  *           *   * :
4lxr_A_1     143:LTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKL-------RQ-------MPRGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATSVLG--IDI: 225
SecStr          :TTT TT SEEEEES -     GGGGTT TT  EEE  SS  ------- S-------  TT GGG TT  EEE  SS      GGGGTT TT  E--EE :    
ExpBur          :beebeebebbbbebe-beebeeebbebbeebeebbbbebeb-------ee-------bbeebbeebeebeebbbbbbebeebeeebbeebeebeb--bbb:    
Contact         :              b                      bbb                                   bbb                      

queryA       489:SLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLD--------FDNASALTEL---SDLEVLDLSYNSHYFRIAGV----: 573
                :  * *       *  *      *****       *  *    *     * ***          * *   *  *     *  *      *   *       :
4lxr_A_1     226:HDNGIEQLPHDVFAHLTNVTDINLSANLFRSLPQGL-FDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQILRLRAELQSLPGDLFEHSTQITNISLGD: 324
SecStr          : SS      TTTTTT TT  EEE  S   S   TTT-TTT TT  EEEE   SS      TTTT S TT  EEEE S      TTTTTT TT  EEE  S:    
ExpBur          :eebebeebeeebbbebeebeebbbbbbebeebeebb-beebeebebbebeebebebeebbeebbbebeebebbebebebeebeeebbeebeebbebebbe:    

queryA       574:----THHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTEL: 669
                :    *          **  * ** *    * *        *  *    * *     *       **  * **  *  * ***  *   **      *  *:
4lxr_A_1     325:NLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNLLTGISGD-------IFSNLGNLVTLVMSRNRLRTIDSRAFVST-NGLRHL: 416
SecStr          :S  S   TTTTTT TT  EEE  SS  S   TTTTSS TT  EEE  SS   EE SS-------TTTT TT  EEE  SS   EE TTTTSS -TT  EE:    
ExpBur          :bebeebeeebbeebeebeebbbbebebeebeeebbeebeebeebebbebebeebeee-------bbeebeebebbbbbebebeebeeebbeeb-eebeeb:    

queryA       670:HINDN-----------MLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLK-HLDLSSNLLKTI---NKS: 754
                :*   *           **             *  * ** *   *           ** * ** * ** *    *   *    *     *    *      :
4lxr_A_1     417:HLDHNDIDLQQPLLDIMLQTQINSPFGYMHGLLTLNLRNNSIIFVYNDWKNTMLQLRELDLSYNNISSLGYEDLAFLSQNRLHVNMTHNKIRRIALPEDV: 516
SecStr          :E  SS   TT  HHHHHTT     GGGG TT  EEE  SS   S  HHHHHT TT  EEE TTS   EE GGGG     S  EEE TTS   EE   S  :    
ExpBur          :ebbebebebebeeeebeeeeebebbbeebebbebbbbeebebebbbbbbbeebeebeebbbbebebeebbeebbebebeeebebebbebebeebebeeee:    

queryA       755:ALETKTTTKLSMLELHGNPFECTCDI--------GDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTCV: 823
                :         *    *  **  * * *        *               ***   *  *    *      *  *  :
4lxr_A_1     517:XXXXXXNNNLVHVDLNDNPLVCDCTILWFIQLVRGVHKPQYSRQFKLRTDRLV---CSQPNVLEGTPVRQIEPQTLI: 590
SecStr          :------    EEEE  S  EE SGGGHHHHHHHSSS   SGGGTEEEE TT B---EEESTTTTT BGGG  GGG E:    
ExpBur          :------eebebebbbbebebbbbbebbebbbbbeeebebebbebbebebeebe---beeeeebeeeebeebebeebe:

Protein Model on 4lxr_A_1_N_1 (TEMPLATE: 4lxr )

Input Residue Numbers for Focused Sites