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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [755 aa] | Protein toll :TOLL_DROME | |
2 | b | F 1 (D) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 696R 721H(Y) 742D(N) 744S(T) 745S(H) 768E(D) 771G(D) 794K(R) 797R (identity: 22.2 %/28.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4lxr_A_1 identity=28.9% |
queryA 390:LMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYH-FTRPLIKPQCAAYGKALDL: 488 :* *** * * * ** *** * * ** * * ** * * * * : 4lxr_A_1 143:LTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKL-------RQ-------MPRGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATSVLG--IDI: 225 SecStr :TTT TT SEEEEES - GGGGTT TT EEE SS ------- S------- TT GGG TT EEE SS GGGGTT TT E--EE : ExpBur :beebeebebbbbebe-beebeeebbebbeebeebbbbebeb-------ee-------bbeebbeebeebeebbbbbbebeebeeebbeebeebeb--bbb: queryA 489:SLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLD--------FDNASALTEL---SDLEVLDLSYNSHYFRIAGV----: 573 : * * * * ***** * * * * *** * * * * * * * * : 4lxr_A_1 226:HDNGIEQLPHDVFAHLTNVTDINLSANLFRSLPQGL-FDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQILRLRAELQSLPGDLFEHSTQITNISLGD: 324 SecStr : SS TTTTTT TT EEE S S TTT-TTT TT EEEE SS TTTT S TT EEEE S TTTTTT TT EEE S: ExpBur :eebebeebeeebbbebeebeebbbbbbebeebeebb-beebeebebbebeebebebeebbeebbbebeebebbebebebeebeeebbeebeebbebebbe: queryA 574:----THHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTEL: 669 : * ** * ** * * * * * * * * ** * ** * * *** * ** * *: 4lxr_A_1 325:NLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNLLTGISGD-------IFSNLGNLVTLVMSRNRLRTIDSRAFVST-NGLRHL: 416 SecStr :S S TTTTTT TT EEE SS S TTTTSS TT EEE SS EE SS-------TTTT TT EEE SS EE TTTTSS -TT EE: ExpBur :bebeebeeebbeebeebeebbbbebebeebeeebbeebeebeebebbebebeebeee-------bbeebeebebbbbbebebeebeeebbeeb-eebeeb: queryA 670:HINDN-----------MLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLK-HLDLSSNLLKTI---NKS: 754 :* * ** * * ** * * ** * ** * ** * * * * * * : 4lxr_A_1 417:HLDHNDIDLQQPLLDIMLQTQINSPFGYMHGLLTLNLRNNSIIFVYNDWKNTMLQLRELDLSYNNISSLGYEDLAFLSQNRLHVNMTHNKIRRIALPEDV: 516 SecStr :E SS TT HHHHHTT GGGG TT EEE SS S HHHHHT TT EEE TTS EE GGGG S EEE TTS EE S : ExpBur :ebbebebebebeeeebeeeeebebbbeebebbebbbbeebebebbbbbbbeebeebeebbbbebebeebbeebbebebeeebebebbebebeebebeeee: Contact : b b b bb queryA 755:ALETKTTTKLSMLELHGNPFECTCDI--------GDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTCV: 823 : * * ** * * * * *** * * * * * : 4lxr_A_1 517:XXXXXXNNNLVHVDLNDNPLVCDCTILWFIQLVRGVHKPQYSRQFKLRTDRLV---CSQPNVLEGTPVRQIEPQTLI: 590 SecStr :------ EEEE S EE SGGGHHHHHHHSSS SGGGTEEEE TT B---EEESTTTTT BGGG GGG E: ExpBur :------eebebebbbbebebbbbbebbebbbbbeeebebebbebbebebeebe---beeeeebeeeebeebebeebe: Contact : b b b b |