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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [601 aa] | Toll-like receptor 4 :TLR4_HUMAN | |
2 | b | S 1 (D) | non-polymer(LP5) | (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE | 600T(S) 622I(Q) 625N(E) 632I(F) (identity: 0.0 %/30.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4g8a_A_1 identity=30.0% |
queryA 216:VPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHL-K: 314 : * ** * * ** * * **** ** * * * * * * * * * *: 4g8a_A_1 46:IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS----RC-------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK: 128 SecStr : SSS TT EEE TTS EE TTTTTT TT EEE T----T ------------- EE TTTTTT TT EEE TT EE GGGGTT TT E: ExpBur :bbeebeeebeebbbbebbbeebbeebbebbeebeebbbb----eb-------------ebeebeebbbeebeebebbbbebbebeeeeebbbebbeebee: queryA 315:VLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLG----INFIKQID: 410 : * * * * * * * * * ** * * * * * * * * * * *** : 4g8a_A_1 129:LVAVETNLASLENFP---IGHLKTLKELNVAHNLI-----QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA: 220 SecStr :EE TTS STT --- TT TT EEE SS ----- GGGGG TT EEE SS EE GGGGHHHHT TT EEE TT EE TTT: ExpBur :bbbbebebeebeebb---bbebeebeebebbebeb-----eebebbebbeebeebeebebbebebebbeeebbebbeebeebebbbebbebebeebeeeb: queryA 411:FK--------LFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGP-NQF: 501 :** * ** * * * * * ** * * * * * *: 4g8a_A_1 221:FKEIRLHKLTLRNNFDSLNVM-----------KTCIQGLAG-------LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF: 302 SecStr :TTT EEEEEEEES SSHHHH-----------HHHHHTTTT------- EEEEEEEE TTS S TTTTGGGGGSEEEEEEEE S EEE TTTT: ExpBur :beebebeebbbbbbbeebeeb-----------eebbebbbe-------bebebbbbbbeeeeebbeebeebbbebbeebebeebebbbbeeebeebeebb: queryA 502:ENLPDIACLNLSANSNAQV-------------LSGTEFSAIPHVKYLDLTNNRLDF-----DNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNF: 583 : * * * * * * * * ** * ** * ** **** * * * * : 4g8a_A_1 303:NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL--KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK--GCCSQSDF--GT: 396 SecStr :GGGTT SEEEEES EEEE GGGGS SEEEEES EESS B TT -- EEEEES S B B TT EEE SS BEE--EE HHHH--S : ExpBur :ebbeebbbbbbbebebeebeebeeebebeebbbeebebeebbebebeeb--eebbbbebeeeeebeebebeebebbbbbebebebe--ebbbeebb--eb: queryA 584:TNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKF-FNWT: 682 : ** * ** * * * * * * * * * * ** ** * * * * ** * * * : 4g8a_A_1 397:ISLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSE------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPD: 488 SecStr :S EEE S SEEEE S -TT TT EEE TTSEEESTTS------S TTTT TT EEE TTS EE TTTTTT -TT EEE TT EEGGGEE S: ExpBur :eebeebbbbebeebebebbb-ebbeebeebbbeebebeebee------ebbbebbeebebbbbbebebebeeebbbebb-eebebbebbebbbeeeebbe: Contact : b b b b queryA 683:LLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGD: 782 : * *** * * *** * *** * ** ** * * * * * * * * * * *** : 4g8a_A_1 489:IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQNDFACTCEHQS: 587 SecStr : TT TT EEE TTS EE TTTTTT TT EEE TTS B GGGTT TT EEE TTS B SS TT- TT EEE TT B SGGGHH: ExpBur :bbeebeebeebbbbebebeebbeebbebbeebeebbbbebebeebebebbeebeebeebbbbebebebbeeebbe-ebbeebeebbbbebebbbeeebee: queryA 783:FRRWMDE--HLNVKIPRLVDVICASPGDQRGKSIVSLELT: 820 :* * * * * ** * * * ** *: 4g8a_A_1 588:FLQWIKDQRQLLVEVERME---CATPSDKQGMPVLSLNIT: 624 SecStr :HHHHHHHTTTTBS GGG B---B SSTTTTT BGGG : ExpBur :bbebbbeeeebbeeeeebe---beebeeeeeeebbebebe: |