Protein Model on 4g8a_A_1_B_1 (TEMPLATE: 4g8a )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [601 aa] Toll-like receptor 4 :TLR4_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [605 aa] Toll-like receptor 4 :TLR4_HUMAN 547A 567Y(S) 569R(K) 594N 595N(G) 596I(V) 619R(N) 621D(K) 650R(H) 699K(Q) 701L(E) 725S(F) (identity: 16.7 %/30.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4g8a_A_1 identity=30.0%
queryA       216:VPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHL-K: 314
                : *  ** *   * **           *     *  ****    **                 *   * * *  *  * *            *     * *:
4g8a_A_1      46:IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS----RC-------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK: 128
SecStr          :  SSS TT  EEE TTS   EE TTTTTT TT  EEE T----T -------------   EE TTTTTT TT  EEE TT    EE GGGGTT TT  E:    
ExpBur          :bbeebeeebeebbbbebbbeebbeebbebbeebeebbbb----eb-------------ebeebeebbbeebeebebbbbebbebeeeeebbbebbeebee:    

queryA       315:VLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLG----INFIKQID: 410
                :    * *    *         *  *  *    * *     *       ** *  *  * *     *     *   * * * *           ***    :
4g8a_A_1     129:LVAVETNLASLENFP---IGHLKTLKELNVAHNLI-----QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA: 220
SecStr          :EE TTS    STT  --- TT TT  EEE  SS  -----      GGGGG TT  EEE  SS   EE GGGGHHHHT TT   EEE TT    EE TTT:    
ExpBur          :bbbbebebeebeebb---bbebeebeebebbebeb-----eebebbebbeebeebeebebbebebebbeeebbebbeebeebebbbebbebebeebeeeb:    

queryA       411:FK--------LFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGP-NQF: 501
                :**        *  **  *              *   *  *            *    **    *   *        *        *        *    *:
4g8a_A_1     221:FKEIRLHKLTLRNNFDSLNVM-----------KTCIQGLAG-------LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF: 302
SecStr          :TTT EEEEEEEES  SSHHHH-----------HHHHHTTTT------- EEEEEEEE  TTS   S   TTTTGGGGGSEEEEEEEE   S EEE TTTT:    
ExpBur          :beebebeebbbbbbbeebeeb-----------eebbebbbe-------bebebbbbbbeeeeebbeebeebbbebbeebebeebebbbbeeebeebeebb:    

queryA       502:ENLPDIACLNLSANSNAQV-------------LSGTEFSAIPHVKYLDLTNNRLDF-----DNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNF: 583
                :  *       *       *             *    *   *  *   *   ** *      **     *  ** **** *   *   *      *    :
4g8a_A_1     303:NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL--KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK--GCCSQSDF--GT: 396
SecStr          :GGGTT SEEEEES EEEE GGGGS    SEEEEES EESS    B TT -- EEEEES  S  B    B TT  EEE  SS  BEE--EE  HHHH--S :    
ExpBur          :ebbeebbbbbbbebebeebeebeeebebeebbbeebebeebbebebeeb--eebbbbebeeeeebeebebeebebbbbbebebebe--ebbbeebb--eb:    
Contact         :                                                            b  b                   b b              

queryA       584:TNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKF-FNWT: 682
                :  ** * ** *   *      *    *  * *    *            * *  * **  ** *        *  *  *  **  *    *     *   :
4g8a_A_1     397:ISLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSE------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPD: 488
SecStr          :S   EEE  S SEEEE S  -TT TT  EEE TTSEEESTTS------S TTTT TT  EEE TTS  EE  TTTTTT -TT  EEE TT EEGGGEE S:    
ExpBur          :eebeebbbbebeebebebbb-ebbeebeebbbeebebeebee------ebbbebbeebebbbbbebebebeeebbbebb-eebebbebbebbbeeeebbe:    
Contact         :          bbb                      b b                            b                                 

queryA       683:LLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGD: 782
                :       *  ***    *  *        ***  *  ***    *         **  ** * *   *  *  *       *  * *  * * ***    :
4g8a_A_1     489:IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQNDFACTCEHQS: 587
SecStr          :  TT TT  EEE TTS   EE TTTTTT TT  EEE TTS   B   GGGTT TT  EEE TTS   B  SS TT-   TT  EEE TT  B  SGGGHH:    
ExpBur          :bbeebeebeebbbbebebeebbeebbebbeebeebbbbebebeebebebbeebeebeebbbbebebebbeeebbe-ebbeebeebbbbebebbbeeebee:    
Contact         :                b b                       b                                                         

queryA       783:FRRWMDE--HLNVKIPRLVDVICASPGDQRGKSIVSLELT: 820
                :*  *      * *   *     ** * *  *    **  *:
4g8a_A_1     588:FLQWIKDQRQLLVEVERME---CATPSDKQGMPVLSLNIT: 624
SecStr          :HHHHHHHTTTTBS GGG B---B SSTTTTT BGGG    :    
ExpBur          :bbebbbeeeebbeeeeebe---beebeeeeeeebbebebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123