Protein Model on 4bv4_C_1_B_1 (TEMPLATE: 4bv4 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) C 1 (R) polymer(polypeptide(L)) [440 aa] PROTEIN TOLL, VARIABLE LYMPHOCYTE RECEPTOR B CHIMERA :TOLL_DROME:Q4G1L2_EPTBU
2 b B 1 (M) polymer(polypeptide(L)) [68 aa] PROTEIN SPAETZLE C-106 :SPZ_DROME 536D(R) 560D(E) 562S(R) 592S(W) 593H(S) 616S(H) 617G(D) 647S 648L(A) 672N(M) 673D(N) 675M(R) (identity: 8.3 %/32.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4bv4_C_1 identity=32.0%
queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYN-----SHYFRIAGVTHHLEFIQN------------FTNLKVLNLSHNNIYTLTDKYNLE-SKSLVEL: 613
                : *    *  **    *  **    *  * *  *     ** *         **  *               ** ***  *    ** *   *   *    :
4bv4_C_1     125:LKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLWSNQLHNLT-KHDFEGATSVLGI: 223
SecStr          : SEEEEE SS     TTTTTT TT  EEEEES  S   GGGGTT TT  EEE TTS   S  TTGGGG TT  EEE  SS      -GGGGTT TT  EE:    
ExpBur          :beebebbbeeeeebbeebbeebeebbebebebebeebeeebbeebeebeebbbbebebeebbeebbeebeebeebbbbebebeebe-eebbeebeebebb:    
Contact         :    b                       b b                                              bb                     

queryA       614:VFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWT--LLQQFPRLELLDLRG--------------: 697
                :    *    *  *        *  * * *   ** *     *          * *     *          *    * *  * **               :
4bv4_C_1     224:DIHDNGIEQLPHD-------VFAHLTNVTDINLSANLFRSLP-QGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQILRLRAELQSLPGDLFEHST: 315
SecStr          :E  SS      TT-------TTTT TT  EEE  S   S   -TTTTTT TT  EEEE   SS      TTTT S SS  EEEE S      TTTTTT T:    
ExpBur          :bbeebebeebeee-------bbbebeebeebbbbbbebeebe-ebbbeebeebebbebeebebebeebbeebbbebeebebbebebebeebeeebbeebe:    
Contact         :  bb                             bb                       bb b                                      

queryA       698:---------NKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDF-RRWM: 787
                :         * *  *   *      *  * ** **  ***         *  * * ** **          *   *    ** **  * *   *   ** :
4bv4_C_1     316:QITNISLGDNLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLASNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRIDYLSRWL: 413
SecStr          :T  EEE TTS  S   TTTTTT TT  EEE  SS      TTTTSS TT  EEE  SS  S   TTTTTT TT--  EEE  SS B   TTTTHHHHHHH:    
ExpBur          :ebbebebbebebeebeeebbeebeebebbbbbebebeebbeebbbebeebbebebbebebeebeeebbeebee--beebbbeebebeeeeeebebbbebb:    

queryA       788:DE: 789
                :  :
4bv4_C_1     414:NK: 415
SecStr          :HH:    
ExpBur          :ee:

Input Residue Numbers for Focused Sites

ex) 2,15,123