Protein Model on 4bsr_A_1_B_1 (TEMPLATE: 4bsr )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [483 aa] LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 5 :LGR5_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [480 aa] LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 5 :LGR5_HUMAN 255G(Y) 346F(Y) 403I(W) (identity: 0.0 %/35.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4bsr_A_1 identity=35.2%
queryA        47:AECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLN-ITDGAFLNLKNLRELLLEDNQLPQIPSGLP: 145
                :  **   * * *         **** * *          *  *    *                 * *  *  ***  *  *  * *  ***   *    :
4bsr_A_1      43:VDCSDLGLSELPSNLSVFTSYLDLSMNNISQLLPNPLPSLRFLEELRL---------------AGNALTYIPKGAFTGLYSLKVLMLQNNQLRHVPTEAL: 127
SecStr          :EE  SS  SS  SS  TTEEEEE  S   SS  SS     TT  EEE ---------------TT   S   TTTTSS TT  EEE  SS  SB  TTTT:    
ExpBur          :bebeeeebeebbeebbbebbbbbbbebebeebbeeeeeebeebebbeb---------------bebebeebeeebbebbeebebbbbbebebeebbeebb:    

queryA       146:E---SLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKL---PSSLRKLFLSNTQIKYISE: 239
                :    **  * *  * *        * *  *  * *  *         * *    *  *  *    *  *   * *       ***  * * *  *     :
4bsr_A_1     128:QNLRSLQSLRLDANHISYVPPSCFSGLHSLRHLWLDDNAL-------TEIPVQAFRSLSALQAMTLALNKIHHIPDYAFGNLSSLVVLHLHNNRIHSLGK: 220
SecStr          :TT TT  EEE  SS   B  TTSSTT SS  EEE  SS  ------- S  HHHHTT TT  EEE  SS   EE TTTTTT TT  EEE  SS   EE T:    
ExpBur          :eebeebebbebbebebeebbeebbeebeebeebebbebeb-------eebbeebbeebebbeebbbbebebeebeeebbeebeebeebebbebebeebbe:    

queryA       240:EDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRF--AFQNLTQLRYLNLSSTSLRKI------------------------NAAWFKNMPHL: 313
                :  * **  *  ***  *                    * * *  *   *  *  *   *   * *                            *   * *:
4bsr_A_1     221:KCFDGLHSLETLDLNYN--------------------NLDEFPTAIRTLSNLKELGFHSNNIRSIPEKAFVGNPSLITIHFYDNPIQFVGRSAFQHLPEL: 300
SecStr          :TTT S SS  EEE  SS--------------------  SS  GGGGG TT  EEE  SS   EE TTSSTT  S  EEE TTS   EE GGGG S TT :    
ExpBur          :ebbebbeebebbbbbeb--------------------ebeebbebbeebeebeebbbbbbebeebeeebbeebebbeebebeebebeebbeebbeebeeb:    
Contact         :               b                                                                 bb                 

queryA       314:KVLDL-------EFNYLVGE------IASGAFLTMLPR--------LEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQ: 392
                :  * *       **  * *          **    **         *  **** *      *        **    *    **     *   * **   *:
4bsr_A_1     301:RTLTLNGASQITEFPDLTGTANLESLTLTGAQISSLPQTVCNQLPNLQVLDLSYNLLE-DLP-------SFSVCQKLQKIDLRHNEIYEIKVDTFQ---Q: 389
SecStr          : EEEEES TT  S    TT     EEEEESS      TTSGGG SS  EEE  SS   -S  -------  SS TT  EEE  SS   EE SGGGT---T:    
ExpBur          :eebebeebeebeebbebeebeebeebbbbebebeebeeebbeebeebeebbbbebebe-ebb-------ebeebeebeebbbeebebeebeeebbb---e:    
Contact         :                                                     b                                              

queryA       393:LPNLSTINLGINFIKQIDFKLFQNFSNL: 420
                :*  *   **  * *  *    *     *:
4bsr_A_1     390:LLSLRSLNLAWNKIAIIHPNAFSTLPSL: 417
SecStr          : TT  EEE  SS   EE TTTTTT TT :    
ExpBur          :beebeebbbbebebeebeeebbeebeeb:    
Contact         :          b

Input Residue Numbers for Focused Sites

ex) 2,15,123