Protein Model on 3wpi_A_1_B_1
(TEMPLATE: 
3wpi
)Protein Model on 3wpi_A_1_B_1
(TEMPLATE: 3wpi
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [727 aa] | Toll-like receptor 9 :TLR9_MOUSE | |
| 2 | b | B 1 (B) | polymer(polydeoxyribonucleotide) [9 base] | DNA (5'-D(*CP*CP*TP*CP*AP*AP*TP*AP*GP*GP*GP*TP*GP*AP*GP*GP*GP*G)-3') | 95N(K) 134D(Y) 154I(S) 155Q(H) 176Y(F) 178A(D) 182Y 183F(Y) 184N(K) 207S 209S(K) 210F(Y) 228F(L) 231N(Y) 250L(V) 252D 258P(R) 264P 265F(N) 291Y(G) 295S(K) 315V 320F(E) 341I(K) (identity: 20.8 %/34.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3wpi_A_1 identity=34.3% |
queryA 35:PCDEKKQNDSVIAECSNRRLQEVPQTVGKY----VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
:** * * * ** * * * * * * * * * ** ** * * * ** * **:
3wpi_A_1 13:PCELKPHG---LVDCNWLFLKSVPRFXXXXSCSNITRLSLISNRIHHLHNSDFVHLSNLRQLNLKWN--CPPTGLSXXXXSCHMTIEPRTFLAMRTLEEL: 107
SecStr :TSEEETTT---EEE TTS SS ---- TT EEE TT EE TTTTGGGTT SEEE TTS--B SSS ---- EE TTTTTT TT EE:
ExpBur :ebeeeeee---bbebbebebeebbee----ebeebeebbbbebebeebeeebbeebeebeebbbeeb--bbbeeee----ebebeeeeebbeebeebeeb:
Contact : b
queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCE-KTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229
: * * * ** ** *** ** * * * *** * * * * *** * * ** ** ** * :
3wpi_A_1 108:NLSYNGITTVPR-LPSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSQLTHLSLKYNNLTKVPRQLPPSLEYLLV: 206
SecStr :E SB SS - TT EEE TTS EE TTTTTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS SS SS TT SEEE :
ExpBur :ebbebbbeebbe-bbeebbebbbbbbebeebeeebbeebeebebbebbbbbbeebeeeeebebeebbbeebeebbebbbeebebeebbeebbeebeebeb:
Contact : b bb b b bbb b bb b
queryA 230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIAS: 329
:* * ** * * ** *** ** ** ** * * * * * * * * ** * ** * **** * * * :
3wpi_A_1 207:SYNLIVKLGPEDLAQLTSLRVLDVGGNCRRCDHAPNPCIEC-GQKSLHLHPETFHHLSHLEGLVLKDSSLHTLNSSWFQGLVQLSVLDLSENFLYESITH: 305
SecStr : SS EE GGGGTT TT SEEE TTSSB TT SS B -SSSS EE TTTTTT TT EEE SS S GGGGTT TT EEE TTSS TTGGGT:
ExpBur :bbbebeebbeebbeebeebeebbbbbbbeebeeeeeeeeeb-ebebbebeeebbeebeebebbbbbbbbbeebeeebbebbeebbebbbbebebbebbbe:
Contact : b b b b bb b b b b
queryA 330:GAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENR: 429
: * ** * ***** * * ** * * * * * ** * * * *** * * * * ** **:
3wpi_A_1 306:TNAFQNLTRLRKLNLSFNYRXXXXXXRLHLASSFKNLVSLQELNMNGIFFRLLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFVDLSDNR: 405
SecStr : GGGG TT EEE TT ------ GGGGG TT EEE TT SEE TTTTGGGTT TT EEE S EE GGGGGSSSS EEE SS :
ExpBur :bebbeebeebeebebbebee------ebebbebbeebeebeebbbbbbebeebbeebbeebbebeebebbbbeebebeebebbbbeebeebeebbbbebe:
Contact : b
queryA 430:IS-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSA: 528
:** * * * *** * * * * * ** ** ** ** * * :
3wpi_A_1 406:ISGPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDR------CKXXKFTMDLSRNNLVTIKPEMFVQLSRLQCLSLSHNSIAQAVNGSQFLP: 499
SecStr : SS ----------------------------------- ------ -- EEE SS SS GGGGTT TT EEE TTS B S S TT:
ExpBur :bebeee-----------------------------------ebe------be--ebbbebbebebeebeeebbeebeebebbbbbebebebebebebbeb:
queryA 529:IPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDD: 628
: *** * ** ** * ******* * * * * * * ** * * * * * * **** * * :
3wpi_A_1 500:LTNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSQXXXXXGIGHQFSFVTHLSMLQSLSLAHNDIHTRVSSH-LNSNSVRFLDFSGNGMGRMW-DEG: 597
SecStr : TT EEE SS B TTTTTT TT EEE TT ----- S BTGGGGG TT EEE TT TTB S - BSS EEE TTS HHHHH-TST:
ExpBur :beebbbbbbbebebebeeeebbebbeebebbbbbebee-----eeeebbbbbeebeebebbbbbebeeeeebbee-bebebbeebebbebebbebb-eee:
queryA 629:NRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLP: 728
: * * ** * **** * * *** ** * ** * ***** * * ** *** ** * ** * * * * * :
3wpi_A_1 598:GLYLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFNWTSLSFLPNLEVLDLAGNQLKALTQGTLPNGTLLQKLDVSSNSIVSVV: 697
SecStr :TTTTTTTTTBTT EEE TTS S HHHHHTS TT EEE TTS GGGGGGSTT EEE TTS B S TT EEE TTS B :
ExpBur :eebeebbebbeebeebebbebebeebeeebbebbbeebeebbbeebebeebebebbeebeebeebbbbebebebbeebebbeebebeebbbbebebeebe:
queryA 729:SGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVD-VICASPGDQRGKSIVSLELTTC: 822
: * ** ** * *** * * * ** * * * * * * * *** * ** * *:
3wpi_A_1 698:PAFFALAVELKEVNLSHNILKTVDRSWF-GPIVMQLTVLDVRSNPLHCACGAAFVDLLLE--VQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLC: 789
SecStr :TTSSTT TT EEE TTS S TTTT-GGGGGT SEEE TT EE TT THHHHHHH--SGGGSTTTTTTSBEEESTTTTTSBTTSS TT :
ExpBur :eebbeebeebeebbbbebebeebeeebb-eebbeebeebbbeebebebeeeeebbebbbe--beeebeebbbebebeeeeebeeebbbeeebeee:
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[assembly_id:1]
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