[pdbjlvh2]Protein Model on 3wph_A_1_E

Protein Model on 3wph_A_1_E_1 (TEMPLATE: 3wph )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [725 aa]	Toll-like receptor 9 :TLR9_MOUSE
2	b		E 1 (A)	non-polymer(SO4)	SULFATE ION	506D(R) (identity: 0.0 %/34.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3wph_A_1 identity=34.3%

queryA        35:PCDEKKQNDSVIAECSNRRLQEVPQ----TVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**  *         *    *  **           * * *  * * *  *  *  * **   **  *             *    *    **    * **:
3wph_A_1      13:PCELKXXG---LVDCNWLFLKSVPRFXXXASCSNITRLSLISNRIHHLHNSDFVHLSNLRQLNLKWN--CPPTGXXXXXXSCHMTIEPRTFLAMRTLEEL: 107
SecStr          :TSEE -- ---EEE TTS  SS    ---   TT  EEE TT    EE TTTTGGGTT SEEE TTS--B    ------    EE TTTGGG TT  EE:    
ExpBur          :ebeee--e---bbebbebebeebbee---eebeebeebbbbebebeebeeebbeebeebebbbbeeb--bebee------ebebeeeeebbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCE-KTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229
                : *  *     *  ** **  ***   **          *  *  *    ***    *        *    *  *  ***  * *  **  ** **  *  :
3wph_A_1     108:NLSYNGITTVPR-LPSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSQLTHLSLKYNNLTKVPRQLPPSLEYLLV: 206
SecStr          :E  SB  SS   -  TT  EEE TTS   EE TTTTTT TT  EEE   SSBTTB  SS  EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE :    
ExpBur          :ebbebbbeebbe-bbeebbebbbbbbebeebeeebbeebeebebbebbbbbbeebeeeeebebeeebbeebeebbebbbeebebeebbeebbeebeebeb:    

queryA       230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIAS: 329
                :*   *     **   *  *  **  *** **  ** **  * *  *       *  *  *  * *   **   *  **     * ****  * *   *  :
3wph_A_1     207:SYNLIVKLGPEDLAQLTSLRVLDVGGNCRRCDHAPNPCIEC-GQKSLHLHPETFHHLSHLEGLVLKDSSLHTLNSSWFQGLVQLSVLDLSENFLYESITH: 305
SecStr          : SS   EE GGGGTT TT SEEE TTSSB  TT SS   B -SSSS EE TTTTTT SS  EEE  SS   S  GGGGTT TT  EEE TTSS HHHHHH:    
ExpBur          :bbbebeebbeebbeebeebebbbbbbbbebbeeeeeeeeeb-eeeebebeeebbeebeebebbbbebbbbeebeeebbebbeebeebbbbebebeebbbe:    

queryA       330:GAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENR: 429
                :      * **  * *****              *  * **  *   *  *  *       *  ** * *  *  *** *     *  *  *    ** **:
3wph_A_1     306:TNAFQNLTRLRKLNLSFNYXXXXXXARLHLASSFKNLVSLQELNMNGIFFRLLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFVDLSDNR: 405
SecStr          :  TTTT  S  EEE TT  ------      GGGGG TT  EEE TT   SEE TTTSGGGTT TT  EEE  SS   EE GGGGGSSSS  EEE  SS :    
ExpBur          :bebbeebeebeebebbebe------eebebbebbeebebbebbbbbbbebebbbeebbeebbebeebbbbbbbebebeebebbbbeebeebeebbbbebe:    

queryA       430:IS-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSA: 528
                :** *                                       *      *       *** *    * *  *  *    ** ** ** **   *  *  :
3wph_A_1     406:ISGPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDR------CKNFKFTMDLSRNNLVTIKPEMFVQLSRLQCLSLSHNSIAQAVNGSQFLP: 499
SecStr          :  S   -----------------------------------   ------ TTTS EEE TTS  SS  GGGGTT TT  EEE TTS    B  S TTTT:    
ExpBur          :beeeee-----------------------------------eee------beeeebbbebbebebeebeeebbeebeebebbbbbebebebebebebbeb:    
Contact         :                                                                             b                      

queryA       529:IPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDD: 628
                :      ***  * **        **  *  *******      *  *   *      *  * * ** * *      * * *   * ****     * *  :
3wph_A_1     500:LTNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSXXXXXXGIGHQFSFVTHLSMLQSLSLAHNDIHTRVSSH-LNSNSVRFLDFSGNGMGRMW-DEG: 597
SecStr          : TT  EEE  SS  B   TTTTTT TT  EEE TT  ------  S TTGGGGG TT  EEE TT    TT  S -  BSS  EEE TTS HHHHH-TTT:    
ExpBur          :beebbbbbbbebebebeeeebbebbeebebbbbbebe------eeeebbbbbeebeebebbbbbebeeeeebbee-bebebbeebbbbebbbbebb-eee:    

queryA       629:NRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLP: 728
                :  *   * **  *  **** * *         *** **  *   ** * ***** *   * ** *** ** *  **         *  *  * * *    :
3wph_A_1     598:GLYLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFNWTSLSFLPNLEVLDLAGNQLKALTQGTLPNGTLLQKLDVSSNSIVSVV: 697
SecStr          :TTTTTTTTTBTT  EEE TTS  S   HHHHHTS TT SEEE TTS      GGGGGG TT  EEE TTS    B SS   TT    EEE TTS    B :    
ExpBur          :eebbebbebbeebeebebbebebeebeeebbebbbeebeebbbeebebeebebebbeebeebeebbbbebebeebeeeebbeebebeebebbebebeebe:    

queryA       729:SGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVD-VICASPGDQRGKSIVSLELTTC: 822
                :  *      **   ** * ***   *         *  *    **  * *               * * *   * * ***   * **    *  *:
3wph_A_1     698:PAFFALAVELKEVNLSHNILKTVDRSWF-GPIVMQLTVLDVRSNPLHCACGAAFVDLLLE--VQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLC: 789
SecStr          :TTTTTT TT  EEE TTS  S   GGGT-GGGGGT SEEE TT  EE  SS SHHHHHHH--TGGGSTTHHHHSBEEESTTTBTSBTTSS STT :    
ExpBur          :eebbeebeebeebebbebebeebeeebb-eebbeebeebbbeebebebeeebebbebbbe--beeebebbbbebebeeeeebeeebbbeeebeee:

Protein Model on 3wph_A_1_E_1 (TEMPLATE: 3wph )

Input Residue Numbers for Focused Sites