Protein Model on 3wpg_A_1_B_1
(TEMPLATE: 
3wpg
)Protein Model on 3wpg_A_1_B_1
(TEMPLATE: 3wpg
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [728 aa] | Toll-like receptor 9 :TLR9_MOUSE | |
| 2 | b | B 1 (B) | polymer(polydeoxyribonucleotide) [11 base] | DNA (5'-D(*CP*CP*TP*GP*GP*AP*TP*GP*GP*GP*AP*A)-3') | 95N(K) 96H(W) 129E 131L(N) 134D(Y) 150E(N) 152S 154I(S) 155Q(H) 174N(V) 176Y(F) 178A(D) 182Y 183F(Y) 184N(K) 207S 209S(K) 210F(Y) 228F(L) 231N(Y) 250L(V) 252D 258P(R) 264P 265F(N) 291Y(G) 293N(V) 295S(K) 315V 319E(S) 320F(E) 341I(K) 343D(N) 345S 346F (identity: 25.7 %/34.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3wpg_A_1 identity=34.4% |
queryA 35:PCDEKKQNDSVIAECSNRRLQEVPQ----TVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
:** * * * ** * * * * * * * * * ** ** * * * ** * **:
3wpg_A_1 13:PCELKXXG---LVDCNWLFLKSVPRFXXXASCSNITRLSLISNRIHHLHNSDFVHLSNLRQLNLKWN--CPPTGXXXXXXSCHMTIEPRTFLAMRTLEEL: 107
SecStr :TSEE -- ---EEE TTS SS --- SS EEE TT EE TTTTGGGTT EEE TTS--B ------ EE TTTGGG TT EE:
ExpBur :ebeee--e---bbebbebebeebbee---eebeebeebbbbebebeebebebbeebeebebbbbeeb--bebee------ebebeeeeebbeebeebeeb:
Contact : bb b
queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCE-KTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229
: * * * ** ** *** ** * * * *** * * * * *** * * ** ** ** * :
3wpg_A_1 108:NLSYNGITTVPR-LPSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSQLTHLSLKYNNLTKVPRQLPPSLEYLLV: 206
SecStr :E SB SS - TT EEE TTS EE TTTTTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS SS SS TT SEEE :
ExpBur :bbbebbbeebbe-bbeebeebbbbbbebeebeeebbeebeebebbebbbbbbeebeeeeebebeeebbeebeebbebbbeebebeebbeebbeebeebeb:
Contact :b b b b bb b b b bbb b bb b
queryA 230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIAS: 329
:* * ** * * ** *** ** ** ** * * * * * * * * ** * ** * **** * * * :
3wpg_A_1 207:SYNLIVKLGPEDLAQLTSLRVLDVGGNCRRCDHAPNPCIEC-GQKSLHLHPETFHHLSHLEGLVLKDSSLHTLNSSWFQGLVQLSVLDLSENFLYESITH: 305
SecStr : SS EE TTTTTT TT SEEE TTSSB TT SS B -SSSS EE TTTTTT TT EEE TTS SS GGGTTT TT EEE TTSS TTHHHH:
ExpBur :bbbebeebbeebbeebeebebbbbbbbbebbeeeeeeeeeb-eeeebebeeebbeebeebebbbbebbbbeebeebbbebbeebeebbbbebbbbebbbe:
Contact : b b b b bb b b b b bb
queryA 330:GAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENR: 429
: * ** * ***** * * * ** * * * * * ** * * * *** * * * * ** **:
3wpg_A_1 306:TNAFQNLTRLRKLNLSFNYRKXXXXARLHLASSFKNLVSLQELNMNGIFFRLLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFVDLSDNR: 405
SecStr : TTSS S EEE TT ---- GGGGG TT EEE TT EE TTTTGGGTT TT EEE SS EE GGGGGT SS EEE SS :
ExpBur :bebbeebeebeebbbbebbee----eebebbebbeebebbebbbbbbbebebbbeebbeebbebeebebbbbeebebeebebbbbeebeebeebbbbebe:
Contact : b b bb
queryA 430:IS-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSA: 528
:** * * * *** * * * * * ** ** ** ** * * :
3wpg_A_1 406:ISGPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDR------CKNFKFTMDLSRNNLVTIKPEMFVQLSRLQCLSLSHNSIAQAVNGSQFLP: 499
SecStr : SS ----------------------------------- ------ TTTS EEE TTS SS GGGGTT TT EEE TTS B S S TT:
ExpBur :bebeee-----------------------------------eee------beeeebbbebbebebeebeeebbeebeebebbbbbebebebebebebbeb:
queryA 529:IPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDD: 628
: *** * ** ** * ******* * * * * * * ** * * * * * * **** * * :
3wpg_A_1 500:LTNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSQXXXXXGIGHQFSFVTHLSMLQSLSLAHNDIHTRVSSH-LNSNSVRFLDFSGNGMGRMW-DEG: 597
SecStr : TT EEE SS B TTTTTT TT EEE TT ----- S BTGGGGG TT EEE TT TTB S - EESS EEE TTS HHHHT-TST:
ExpBur :beebebbbbbebebebeeeebbebbeebebbbbbebee-----eeeebbbbbeebeebebbbbbebeeeeebbee-bebebbeebbbbebbbbebb-eee:
queryA 629:NRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLP: 728
: * * ** * **** * * *** ** * ** * ***** * * ** *** ** * ** * * * * * :
3wpg_A_1 598:GLYLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFNWTSLSFLPNLEVLDLAGNQLKALTQGTLPNGTLLQKLDVSSNSIVSVV: 697
SecStr :TTTTTTTTEETT EEE TTS S HHHHHTS TT EEE TTS GGGGGG TT EEE TTS B S TT EEE TTS B :
ExpBur :eebbebbeebeebeebebbebebeebeeebbebbbeebeebbbeebebeebebebbeebeebeebbbbebebeebeebebbeebebeebbbbebebeebe:
queryA 729:SGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVD-VICASPGDQRGKSIVSLELTTC: 822
: * ** ** * *** * * * ** * * * * * * * *** * ** * *:
3wpg_A_1 698:PAFFALAVELKEVNLSHNILKTVDRSWF-GPIVMQLTVLDVRSNPLHCACGAAFVDLLLE--VQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLC: 789
SecStr :TTSSTT TT EEE TTS S GGGT-GGGGGT SEEE S EE TT SHHHHHHH--TGGGSTTTTTTSBEEESTTTBTSBTTSS TT :
ExpBur :eebbeebeebeebbbbebebeebeeebb-eebbeebeebbbeebebebeeebebbebbbe--beeebebbbeebebeeeeebeeebbbeeebeee:
|
[assembly_id:1]
[help]