Protein Model on 3wpe_A_1_B_1
(TEMPLATE: 
3wpe
)Protein Model on 3wpe_A_1_B_1
(TEMPLATE: 3wpe
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [714 aa] | Toll-like receptor 9 :TLR9_BOVIN | |
| 2 | b | B 1 (C) | polymer(polydeoxyribonucleotide) [6 base] | DNA (5'-D(*CP*AP*TP*GP*AP*CP*GP*TP*TP*CP*CP*T)-3') | 51N(W) 53R(F) 55Q(K) 72D(S) 73N 74F(R) 76T(H) 77H 96H(W) 106N(S) 107P 108G(M) 110Q(F) 111S(P) (identity: 21.4 %/36.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3wpe_A_1 identity=36.9% |
queryA 35:PCDEKKQNDSVIAECSNRRLQEVPQ-TVGKY---VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
:** * * ** * ** * * * * * * * ** ** * * * ** * **:
3wpe_A_1 13:PCELQPHGQ---VDCNWLFLKSVPHFSAGAPRANVTSLSLISNRIHHLHDSDFVHLSNLRVLNLKWN--CPPAGLSPMHFPCRMTIEPNTFLAVPTLEEL: 107
SecStr :TSEE STTE---EE TTS SS TTS GGG EEE TT EE TTSSTT TT EEE TTS--B TTTSTT EE TTTTTT TT EE:
ExpBur :ebeeeeeee---bebeeeebeebbebeeebebeebbbbbbebbebeebeeebbeebeebeebebeeb--bbbeebbeeeeebebeeeeebbeebeebeeb:
Contact : b b b bbb bb b bbb bb
queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229
: * * * ** *** * * * ** *** * * * ** *** * * ** ** ** * *:
3wpe_A_1 108:NLSYNGITTVPALP-SSLVSLSLSHTSILVLGPTHFTGLHALRFLYMDGNCYYMNPCPRALEVAPGALLGLGNLTHLSLKYNNLTEVPRRLPPSLDTLLL: 206
SecStr :E SB S -TT EEE TTSS EE SGGGTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS SS SS TT SEEE :
ExpBur :ebbebbbeebbebb-eebebbbbbbbebeebbeeebeebeebeebebbbbbbeebebeeebebeeebbeebeebbebbbeebebeebbeebbeebebbbb:
queryA 230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGG-ASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIA: 328
:* * ** * * ** *** ** * ** * * * * * * * ** * ** * **** * * * :
3wpe_A_1 207:SYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCRECPKNFPKLHPDTFS--HLSRLEGLVLKDSSLYKLEKDWFRGLGRLQVLDLSENFLYDYIT: 304
SecStr :TTS B GGGGTT TT SEEE TTSS TTS SS TT B GGGGT--T TT EEE TTS SS HHHHTT TT EEE TTSSTTTHHH:
ExpBur :bbbebbebbeebbeebeebeebbbbbbbbbeeeeebeeeebeeeeeeeeeebbe--ebeebebbbbebbbbeebeeebbeebeebbebbbbbbbbbebbe:
queryA 329:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSEN: 428
: * * * ***** * * * * ** * * * * * * ** * * *** * * * * ** *:
3wpe_A_1 305:KTTIFNDLTQLRRLNLSFNYHKKVSFAHLHLASSFGSLVSLEKLDMHGIFFRSLTNITLQSLTRLPKLQSLHLQLNFINQAQLSIFGAFPSLLFVDLSDN: 404
SecStr :H TTTT TT EEE TT SS BS GGGG TT EEE TTS BSEE TTTTGGGGG TT EEE SS SEE GGGGGG SS EEE SS:
ExpBur :ebebbeebeebeebebbbbbeeeeeeeebebbebbeebebbeebbbbbbbbeebbeebbebbeebeebeebbbbebebeeeebebbeebeebeebbbbeb:
queryA 429:RISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKA-------------------------------------------: 485
:*** :
3wpe_A_1 405:RIS------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCN: 450
SecStr : ---------------------------------------------------------------------------------------------- T:
ExpBur :ebe----------------------------------------------------------------------------------------------ebe:
queryA 486:----LDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQ: 581
: **** * * * * ** ** ** * * * *** * ** *** ** ******* * ** * * * :
3wpe_A_1 451:LNFTLDLSRNNLVTIQQEMFTRLSRLQCLRLSHNSISQAVNGSQFVPLTSLRVLDLSHNKLDLYHGRSFTELPQLEALDLSYNSQPFSMQGVGHNLSFVA: 550
SecStr :TS EEE SS S GGGGTT TT EEE S B S SSTT TT EEE SS B STTTTTT TT EEE S HHHHT TT B GGGG:
ExpBur :eebbbbbbebebeebeeeebeebeebebbebbebebebebebebbeebeebebbbbbebebebeebebbebbeebebbebbebeebbeeeeeebebebbe:
queryA 582:NFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNW: 681
: * * * ** * * * ** * **** * * * * **** ** **** * * *** ** * ** * ****:
3wpe_A_1 551:QLPSLRYLSLAHNGIHSRVSQ-KLSSASLRALDFSGNSLSQMWAEGD-LYLCFFKGLRNLVQLDLSENHLHTLLPRHLDNLPKSLRQLRLRDNNLAFFNW: 648
SecStr :G TT EEE TTS SSB S- BSS EEE SS HHHHTTSTT-TTTTTTTTBTT EEE SS S HHHHHTS TT SEEE TT S S:
ExpBur :ebeebeebbbbebebbbebbe-ebebebbebbbbbbbbbeebbeeee-ebbbbbebbeebeebbbbebebeebeeebbebbbebbeebebeebebeebeb:
queryA 682:TLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIG: 781
: * **** *** ** * * * * * * * ** * * ** * *** * * * * ** * :
3wpe_A_1 649:SSLTVLPRLEALDLAGNQLKALSNGSLPPGIRLQKLDVSSNSIGFVIPGFFVRATRLIELNLSANALKTVDPSWFGXXAGT-LKILDVSANPLHCAXXXA: 747
SecStr :GGGGG TT EEE TTS EE SS S TT EEE TTS EE TTSSTT TT EEE SS S GGG -- TT- EEE S EE --- :
ExpBur :ebbeebeebebbbbbebebebbbeeebbeebebeebbbbebebeebeeebbeebeebeebbbbebebeebeeebbe--eee-beebebeebebeee---e:
queryA 782:DFRRWMDEHLNVKIPRLVDVICASPG: 807
: * * * * ***:
3wpe_A_1 748:-FVDFLLERQEAVPXXXXXVTCGSPG: 772
SecStr :-HHHHHHHTTTT ----- EEE :
ExpBur :-beebbeebeebbe-----eeeeeee:
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[assembly_id:1]
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