Protein Model on 3wpd_A_1_B_1
(TEMPLATE: 
3wpd
)Protein Model on 3wpd_A_1_B_1
(TEMPLATE: 3wpd
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [752 aa] | Toll-like receptor 9 :Q2EEY0_HORSE | |
| 2 | b | B 1 (C) | polymer(polydeoxyribonucleotide) [10 base] | DNA (5'-D(*CP*CP*TP*GP*GP*AP*TP*GP*GP*G)-3') | 95N(K) 134D(Y) 152S(I) 154I(S) 155Q(R) 176Y 178A(D) 184N(K) 207S 209S(K) 228F(L) 231N(Y) 250L(V) 252D 258P(R) 262N(H) 264P(R) 265F(N) 293N(V) 295S(K) 315V 319E(S) 320F(E) 341I(R) 343D(N) 345S 346F 373H(D) 375R(H) (identity: 20.7 %/35.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3wpd_A_1 identity=35.8% |
queryA 35:PCDEKKQNDSVIAECSNRRLQEVPQTVGKY----VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
:** * * ** ** * * * * * * * ** * ** * * * ** * **:
3wpd_A_1 13:PCELQPHG---LVNCNWLFLKSVPHFSAAAPRDNVTSLSLLSNRIHHLHDSDFAQLSNLQKLNLKWN--CPPAGLSPMHFPCHMTIEPNTFLAVPTLEEL: 107
SecStr :TSB TTT---EEE TTS SS SSS GGG EEE TT EE TTSSTT TT EEE TTS--B GGGSTT EE TTTTTT TT EE:
ExpBur :ebeeeeee---ebebeeeebeebbebeeebebeebebbbbebbebeebeeebbeebeebeebebeeb--bbbeebbeeeeebebeeeeebbeebeebeeb:
Contact : b
queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229
: * * * ** ** * * ** * * ** *** * * * ** *** * * ** ** ** * *:
3wpd_A_1 108:NLSYNGITTVPA-LPSSLVSLILSRTNILQLDPTSLTGLHALRFLYMDGNCYYKNPCGRALEVAPGALLGLGNLTHLSLKYNNLTTVPRSLPPSLEYLLL: 206
SecStr :E SB SS - TT EEE TTS EE TTTSTT TT EEE SSBTTB SS EE TTSSTT TT EEE SS SS SS TT SEEE :
ExpBur :bbbebbbeebbe-bbeebbbbebbbbebeebeeebbeebeebeebebbbbbbeebeeeeebebeeebbeebeebbbbbbeebebeebbeebbeebeebeb:
Contact : b b bb b b b b b b
queryA 230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGG-ASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIA: 328
:* * ** * * ** *** ** * *** * * * * * * * ** * ** * **** * * * :
3wpd_A_1 207:SYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCVECPHKFPQLHSDTFS--HLSRLEGLVLKDSSLYQLNPRWFRGLGNLTVLDLSENFLYDCIT: 304
SecStr : SS EE GGGGTT TT SEEE TTSSB TT SS B TT EE TTTTT--T TT EEE SS S GGGSTT TT EEE TTSSTTTHHH:
ExpBur :bbbebeebbeebbeebeebeebbbbbbbebbeeeeeeeeebeeeeeebeeebbe--ebeebebbbbebbbbeebeeebbeebeebeebbbbebbbbebbe:
Contact : b b b b b bb b b b bb
queryA 329:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSEN: 428
: * * * ***** * * * **** * * * * *** ** * * *** * * * * * ** *:
3wpd_A_1 305:KTKAFQGLAQLRRLNLSFNYHKKVSFAHLTLAPSFGSLLSLQELDMHGIFFRSLSQKTLQPLARLPMLQRLYLQMNFINQAQLGIFKDFPGLRYIDLSDN: 404
SecStr :H TTTT S EEE TT BTTTB GGGGG TT EEE TTS SB TTTTGGGTT SS EEE SS B GGGGTT TT EEE SS:
ExpBur :ebebbeebeebeebebbebbbeeeeebebebbebbeebebbeebbbbbbbbeebeeebbebbeebeebeebbbbebebeebebebbeebeebebbbbbeb:
Contact : b b bb b b
queryA 429:RISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSA: 528
:*** * * * **** * * * * ** ** ** * * * :
3wpd_A_1 405:RISGAVEXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXEDFMPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSISQAVNGSQFVP: 498
SecStr : SS ------------------------------------- SS SSSSS EEE S SS SGGGTT TT SEEE SS EESSSSSTT:
ExpBur :ebebeee-------------------------------------eebbeebeebebbbbbbebebeebeeebbeebeebebbebbebebeeebebebbee:
queryA 529:IPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDD: 628
: *** * ** *** ** ******* * ** * * * * * * ** * * * ** * **** * * *:
3wpd_A_1 499:LTSLQVLDLSHNKLDLYHGRSFTELPRLEALDLSYNSQPFSMRGVGHNLSFVAQLPTLRYLSLAHNGIHSRVSQ-QLCSTSLWALDFSGNSLSQMWAEGD: 597
SecStr : TT EEE SB EE TTTTTT TT EEE SB SSTT SS GGGTT TT EEE TTS SS S- B SS EEE TTS HHHHHHSTT:
ExpBur :beebbbbbbbebebbbbeeebbebbeebebbbbbebeeeeebeeeebebebbeebeebebbbbbebebeeebee-ebebebbebbbbbbbbbeebbeeee:
queryA 629:NRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLP: 728
: * * ** * ***** *** *** ** * * * **** * * ** *** ** * * * * * * * :
3wpd_A_1 598:-LYLRFFQGLRSLIRLDLSQNRLHTLLPCTLGNLPKSLQLLRLRNNYLAFFNWSSLTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLDVSRNSIIFVV: 696
SecStr :-TSTTTTTB TT EEE TTS HHHHHTS TT EEE TT GGGGGG TT EEE SS EE SS TT EEE SS EE :
ExpBur :-ebbebbebbeebbbbbbbebebeebeeebbbbbbeebebbebeebebeebebebbeebeebebbbbbbbebebbbeeebbeebebeebbbbebebeebe:
queryA 729:SGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVK--IPRLVD-VICASPGDQRGKSIVSLELTTCV: 823
: ** * * ** * * * * * * ** * * * * * * * * * *** * ** * * :
3wpd_A_1 697:PGFFALATRLRELNLSANALRTVEPSWFGFLAGS-LEVLDVSANPLHCACGAA----FVDFLLQVQAAVPGLPSRVKCGSPGQLQGRSIFAQDLRLCL: 789
SecStr :TTTTTT TT EEE SS S GGGS S TT- SEEE SS EE TT T----HHHHHHTTGGG TTTTTTSBEEESGGGTTSBTTSTTTTT :
ExpBur :eebbeebeebeebebbebebeebeeebbeeebee-beebebbebebebeeeee----bbebbbebeebbebbbbebebbbeeebeeebbbeeebeeee:
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[assembly_id:1]
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