Protein Model on 3wpb_A_1_B_1 (TEMPLATE: 3wpb )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [752 aa] Toll-like receptor 9 :Q2EEY0_HORSE
2 b B 1 (B) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 720S 721H(R) 742D(N) 744S 766M(V) 768E(D) (identity: 33.3 %/35.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3wpb_A_1 identity=35.8%
queryA        35:PCDEKKQNDSVIAECSNRRLQEVPQTVGKY----VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**            *    *  **          ** * *  * * *     *  * ** * **  *         *        *    **    * **:
3wpb_A_1      13:PCELQPHG---LVNCNWLFLKSVPHFSAAAPRDNVTSLSLLSNRIHHLHDSDFAQLSNLQKLNLKWN--CPPAGLSPMHFPCHMTIEPNTFLAVPTLEEL: 107
SecStr          :TSEEETTT---EEE TTS  SS     TTS GGG  EEE TT    EE TTSSTT TT  EEE  SS--B  TTTSTT      EE TTTTTT TT  EE:    
ExpBur          :ebeeeeeb---ebebeebebeebbebeeebebeebebbbbebbebeebeeebbeebeebeebebeeb--bbbeebbeeeeebebeeeeebbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229
                : *  *     *  ** **  * *   **          *  *  **   ***    *        *    * **  ***  * *  **  ** **  * *:
3wpb_A_1     108:NLSYNGITTVPA-LPSSLVSLILSRTNILQLDPTSLTGLHALRFLYMDGNCYYKNPCGRALEVAPGALLGLGNLTHLSLKYNNLTTVPRSLPPSLEYLLL: 206
SecStr          :E  SB   S   -  TT  EEE TTS   EE TTTSTT TT  EEE   SSBTTB  SS  EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE :    
ExpBur          :bbbbbbbeebbe-bbeebbbbebbbbebbebeeebbeebeebeebebbbbbbeebeeeeebebeebbbeebeebbbbbbeebebeebbeebbeebeebbb:    

queryA       230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGG-ASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIA: 328
                :*   *     **   *  *  **  *** **  *  *** *         * *    *  *  * *   **   *  **     * ****  * *   * :
3wpb_A_1     207:SYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCVECPHKFPQLHSDTFS--HLSRLEGLVLKDSSLYQLNPRWFRGLGNLTVLDLSENFLYDCIT: 304
SecStr          : SS   EE GGGGTT TT SEEE  SSSB  TT SS   B  TT  EE TTTTT--T TT  EEE  SS  S   GGGGTT TT  EEE TTSS TTGGG:    
ExpBur          :bbbebeebbeebbeebeebeebbbbbbbebbeeeeeeeeebeeeeeebeeebbe--ebeebebbbbebbbbeebeeebbeebeebeebbbbebbbbebbe:    

queryA       329:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSEN: 428
                :       *  *  * ***** *     *      *  ****  *   *  *  *     ***  ** *    *  *** *     *  *  *  * ** *:
3wpb_A_1     305:KTKAFQGLAQLRRLNLSFNYHKKVSFAHLTLAPSFGSLLSLQELDMHGIFFRSLSQKTLQPLARLPMLQRLYLQMNFINQAQLGIFKDFPGLRYIDLSDN: 404
SecStr          :T  TTTT TT  EEE TT   TT   B     GGGGG TT  EEE TTS BSEESTTTTGGGTT TT  EEE  SS   EE GGGGTT TT  EEE  SS:    
ExpBur          :ebebbeebeebeebebbebbbeeeeebebebbebbebbebbeebbbbbbbbeebeeebbebbbebeebeebbbbebebeebebbbbeebeebebbbbbeb:    

queryA       429:RISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSA: 528
                :***  *                                          * *      **** *      *  *  *    ** ** **  *   *  *  :
3wpb_A_1     405:RISGAVEXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXEDFMPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSISQAVNGSQFVP: 498
SecStr          :   SS  -------------------------------------  SS  STTSS EEE TTS  SS  GGGGTT TT  EEE TTS     BSS SSTT:    
ExpBur          :ebebeee-------------------------------------eebbeebeebebbbbbbebebeebeeebbeebeebbbbebbebebebebebebbee:    

queryA       529:IPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDD: 628
                :      ***  * **       ***  ** *******  *   ** * * *      *  * * ** *        * * **  * **** *   *   *:
3wpb_A_1     499:LTSLQVLDLSHNKLDLYHGRSFTELPRLEALDLSYNSQPFSMRGVGHNLSFVAQLPTLRYLSLAHNGIHSRVSQ-QLCSTSLWALDFSGNSLSQMWAEGD: 597
SecStr          : TT  EEE  SS    B TTTTTT TT  EEE  S   TT STTS B GGGGTT TT  EEE TT   SSSB S-  EESS  EEE TTS HHHHHHSTT:    
ExpBur          :beebbbbbbbebebbbbeeebbebbeebebbbbbebeeeeebeeeebebebbeebeebebbbbbebebeeebee-ebebebbebbbbbbbbbeebbeeee:    

queryA       629:NRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLP: 728
                :  *   * **  * ***** ***         *** **  *    * * ****  *   * ** *** ** *  *          *  *  * * *    :
3wpb_A_1     598:-LYLRFFQGLRSLIRLDLSQNRLHTLLPCTLGNLPKSLQLLRLRNNYLAFFNWSSLTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLDVSRNSIIFVV: 696
SecStr          :-TTTTTTTEETT  EEE  SS      HHHHTTS TT  EEE TT       GGGGGGSTT  EEE TTS   EE SS   TT    EEE TTS   EE :    
ExpBur          :-ebeebbbbbeebeebbbbebebeebeeebbbbbbeebebbbbeebebeebebebbeebeebebbbbbbbebebbbeeebbeebebeebbbbebebeebe:    
Contact         :                                                                                           bb       

queryA       729:SGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVK--IPRLVD-VICASPGDQRGKSIVSLELTTCV: 823
                : **      *  * ** * * *   *         *  *    **  * *         *  * *    * *   * * ***   * **    *  * :
3wpb_A_1     697:PGFFALATRLRELNLSANALRTVEPSWFGFLAGS-LEVLDVSANPLHCACGAA----FVDFLLQVQAAVPGLPSRVKCGSPGQLQGRSIFAQDLRLCL: 789
SecStr          :TTTTTT TT  EEE  SS  S   GGGGSS GGG- SEEE  S  EE  TT T----HHHHHHHTGGG TTHHHHSBEEESGGGTTSBTT HHHHT  :    
ExpBur          :eebbeebeebeebebbebebeebeeebbeeebee-beebebbebebebeeebe----bbebbbebeebbebbbbebebbbeeebeeebbbeeebeeee:    
Contact         :             b b                     b b

Input Residue Numbers for Focused Sites

ex) 2,15,123