[pdbjlvh2]Protein Model on 3w3j_B_1_D

Protein Model on 3w3j_B_1_D_1 (TEMPLATE: 3w3j )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [746 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		D 1 (D)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	569R (identity: 100.0 %/94.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3w3j_B_1 identity=94.8%

queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :***********   ********************************************************            ******************:
3w3j_B_1       9:SRSYPCDEKKQXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr          :    SSEEE  --- EEE TTS  SS  S   TT  EEE TTS   EE TTTTTT TT  EEE TTSS  ------------  EE TTTTTT TT  EE:    
ExpBur          :ebebbbeeeee---ebbebbebebeebbeebeeebbebbbbebebeebeeebbeebeebbebbbbebbee------------ebebeebbbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************************************************************:
3w3j_B_1     109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr          :E TTS  SS  SS  TT SEEE  SS   EE TTTTTT TT SEEE  SSS TT      EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE T:    
ExpBur          :bbbebebeebbeebbeebbbbbbbbbebbebeeebbbebeebeebebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
3w3j_B_1     209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr          :TS   EE TTTTTT TT  EEE TTSS   TT SS     GGG   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE TTS  HHHHHS :    
ExpBur          :bbebeebbeeebeebeebbbbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebeebebbbbbebebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
3w3j_B_1     309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr          :GGGGG TT  EEE  S   TT   SS    GGGGG TT  EEE TT   SEE TGGGGGGTT TT  EEE  SS   EE GGGGGGSSS  EEE  SS  :    
ExpBur          :ebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbebbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebeb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :**                          ************************************************************************:
3w3j_B_1     409:SPXXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr          :  --------------------------  S TTS SSS  S SS HHHHTTSEEEE  SS      TTTTTT   EEEEE TTS       S TTTTST:    
ExpBur          :ee--------------------------eebebeeebbeeeeebbeeebeeeeebbbbbebebeebeeebbeebbebbbbbbbbbebebebebebbeebe:    

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :****************************************************************************************************:
3w3j_B_1     509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr          :T SEEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TT      SS    EESS  EEE TTS HHHHT TT  T:    
ExpBur          :ebebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebebbbeeeebebebbeebbbbbbbbeebbeeeeee:    
Contact         :                                      b                                                             

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
3w3j_B_1     609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 708
SecStr          :TTTTTTEETT  EEE  SS  S   HHHHHTS TT SEEE  SS      GGGGGG TT  EEE  SS      S GGGT SS  EEE  SS      TT:    
ExpBur          :bbebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbeebebbbbbebebeebbee:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 817
                :***************************************************************************************:
3w3j_B_1     709:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 795
SecStr          :HHHH SS SEEE TTS  S   SGGG  S      EEE TT  EE SGGGHHHHHHHHT TTSB SSGGG BEEESTTTTTSBGGG :    
ExpBur          :bbeebebbebbbbbebebebbeeebbeeeeeeebeebbbbebebebeeebbebeebbeeeeebebbebbbbebeeeeeeeeebbeee:

Protein Model on 3w3j_B_1_D_1 (TEMPLATE: 3w3j )

Input Residue Numbers for Focused Sites