[pdbjlvh2]Protein Model on 3vq2_A_1_G

Protein Model on 3vq2_A_1_G_1 (TEMPLATE: 3vq2 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [581 aa]	Toll-like receptor 4 :TLR4_MOUSE
2	b		G 1 (A)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	364S 365K(N) (identity: 50.0 %/29.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3vq2_A_1 identity=29.6%

queryA       259:RCFNAPFPCVPCDGGASI-NID----------RFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF--LTMLPRLEILDLS: 345
                : *       ** *   *  ***             * *   *  * **      *         **  * *  *        * *  ** *  *      :
3vq2_A_1      17:QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK: 115
SecStr          :E TTS  SS  TTS TT  EEE TTS   EE TTTTTT TT  EEE TT    EE TTTTTT TT  EEE TT  -     TTSSTT TT  EEE TTS :    
ExpBur          :ebeeeebeebbeebeeebeebbbbebebeebebeebeebeebeebbbbebebeebeeebbebbeebbebbbebbe-beebeeebbeebeebebbbbbebe:    

queryA       346:FNYIKGSYP-------QHINISRNF----------SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLS-TINLGINFIKQIDFKLFQNFSNLEIIYLSE: 427
                :      * *          *   **          * *  *    *     *     * * *   *          * *  *    **     *      :
3vq2_A_1     116:LASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN: 214
SecStr          :   SS-SS  TT TT  EEE  SS        GGGGT TT  EEE  SS   EE TTTTHHHHH TT   EEE TT    EE TTTTTT EEEEEEEES :    
ExpBur          :beebe-ebebeebeebeebebbebebeebebbebbeebeebeebbbbebebeebeeebbebbeeeeeeebbbbbbebebeebeeebbeebebebbbbebb:    
Contact         :          bb                    bb bb                                                               

queryA       428:NRISPLVKDTRQSYANSSSFQRHIRKRRSTDFE-------FDP-----------------HSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQF: 501
                :   *   *   *  *       *        *        * *                   *   *     *  * *   *  *   **      *  *:
3vq2_A_1     215:FNSSNIMKTCLQNLAG-----LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN--DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF: 307
SecStr          : S HHHHHHHHHTTTT----- EEEEEEEE  TTS   S   GGGGTTGGGSEEEEEEE   T--T  GGGGS GGGTT SEEEEES          TT :    
ExpBur          :beebeebeebbebbee-----bebebbbbbbeeeeeebeebebebbebbeebebeebebbbbe--ebeeebbebebbbebebbbbebbebeebeebeeeb:    

queryA       502:E-----------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQN: 582
                :                   **    * *  *            * *   ****  * * *        *    *  **** *      *           :
3vq2_A_1     308:KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMG: 397
SecStr          :  SEEEEES   SS      SS  EEEEES SS EE    ---  TT  EEE  SS EEEEEE  HHHH  S   EEE  S SEEEE   ------- TT:    
ExpBur          :ebeebbbeebebeebbebebeebeebbbbebeeebebeeb---ebeebeebbbbebebebeebbbeebbbbeebeebbbbebeebebebb-------beb:    

queryA       583:FTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNW: 681
                :   *  *   *      *        **  *      ***           ** **  *  *    *  *       * *    ** *      *    *:
3vq2_A_1     398:LEELQHLDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISW: 490
SecStr          : TT  EEE TTSEEESTTTTTTT--TT TT  E----EE TTS  EE  TTTTTT TT  EEE TT EEGGGEE S  TT- TT  EEE TTS   EE T:    
ExpBur          :beebeebbbeebebeebeeebbb--ebbeebeb----bbbbebebebeeebbbebbeebebbebbbbbbeeebbbebbee-beebeebbbbebebeebee:    

queryA       682:TLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIG: 781
                :       ** **    * ****  *      ** **  * ***                   *   *    **         *    *  *   * *   :
3vq2_A_1     491:GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI-----------------ETSKGILQHFPKS---------LAFFNLTNNSVACICEHQ: 564
SecStr          :TTTTT TT  EEE  SS  S EEGGGTTT TT  EEE TTS  -----------------  EES GGGS TT---------  EEE  S     SSTTH:    
ExpBur          :ebbeebeebeebebbebebeebebebbeebeebeebbbbebeb-----------------ebbeeebeebbee---------beebbbbebebeeeeeee:    

queryA       782:DFRRWMDEH: 790
                : *  *  * :
3vq2_A_1     565:KFLQWVKEQ: 573
SecStr          :HHHTTTTTS:    
ExpBur          :ebeeeeeeb:

Protein Model on 3vq2_A_1_G_1 (TEMPLATE: 3vq2 )

Input Residue Numbers for Focused Sites