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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [596 aa] | Toll-like receptor 4 :TLR4_MOUSE | |
2 | b | M 1 (D) | non-polymer(LP5) | (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE | 570I(S) 598T(R) 602K(F) (identity: 0.0 %/28.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3vq1_A_1 identity=28.8% |
queryA 259:RCFNAPFPCVPCDGGASI-NID----------RFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF--LTMLPRLEILDLS: 345 : * ** * * *** * * * * ** * ** * * * * * ** * * : 3vq1_A_1 17:QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK: 115 SecStr :E TTS SS TTS TT SEEE SS EE TTTTSS S EEE TT EE TTTTTT SS EEE TT - TTTTTT TT EEE TTS : ExpBur :ebeeeebeebbeebeeebeebbbbebebeebebeebeebeebeebbbbebebeebeeebbebbeebbebbbebbe-beebeeebbeebeebebbbbbebe: queryA 346:FNYIKGSYP-------QHINISRNF----------SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLS-TINLGINFIKQIDFKLFQNFSNLEIIYLSE: 427 : * * * ** * * * * * * * * * * * * ** * : 3vq1_A_1 116:LASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN: 214 SecStr : ST-T S TT TT EEE SS GGGGT TT EEE SS EE TTTTHHHHH TT EEE TT EE TTTTTT EEEEEEEES : ExpBur :beebe-ebebeebeebeebebbebebeebebbebbeebeebeebbbbebebeebeeebbebbeeeeeeebbbbbbebebeebeeebbeebebebbbbebb: queryA 428:NRISPLVKDTRQSYANSSSFQRHIRKRRSTDFE-------FDP-----------------HSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQF: 501 : * * * * * * * * * * * * * * * ** * *: 3vq1_A_1 215:FNSSNIMKTCLQNLAG-----LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN--DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF: 307 SecStr : SSHHHHHHHHGGGTT----- EEEEEEEE BTTB S GGGGGGGGSSEEEEEEE S--S GGGTT GGGTT SEEEEES TT : ExpBur :beebeebeebbeebbe-----bebebbbbbbeeeeeebeebebebbebbeebebeebebbbbe--ebbeebbebebbbebebbbbebbbbeebeebeeeb: queryA 502:E-----------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQN: 582 : ** * * * * * **** * * * * * **** * * : 3vq1_A_1 308:KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMG: 397 SecStr : SEEEEES SS SS EEEEES SS B --- TT EEE SS BEEEE HHHHT S EEE S SEEEE S ------- TT: ExpBur :ebeebebeebebeebbebebeebeebbbbebeeebebeeb---ebeebeebbbbebebebeebbbeebbbbeebebbbbbebeebebebe-------beb: Contact : b queryA 583:FTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNW: 681 : * * * * ** * *** ** ** * * * * * * ** * * *: 3vq1_A_1 398:LEELQHLDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISW: 490 SecStr : TT EEE TTSEEESTTTTTTT--TT TT E----EE TTS EE TTTTTT TT EEE TT EEGGGEE S SS- TT EEE TTS EE T: ExpBur :beebeebbbeebebeebeeebbb--ebbeebeb----bbbbebebebeeebbbebbeebebbebbebbbeeebbbebbee-beebbebbbbebebeebee: Contact : b b queryA 682:TLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIG: 781 : ** ** * **** * ** ** * *** * * ** * * * * * : 3vq1_A_1 491:GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI-----------------ETSKGILQHFPKS---------LAFFNLTNNSVACICEHQ: 564 SecStr :TTTTT TT EEE SS S EEGGGTTT TT EEE TTS ----------------- EES GGGS TT--------- EEE SS SGGGH: ExpBur :ebbeebeebeebebbebebeebbbebbeebeebeebebbebeb-----------------ebbeeebeebbee---------beebbbbebebbbeeeee: queryA 782:DFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTC: 822 : * * * ** * **: 3vq1_A_1 565:KFLQWVKEQKQFLV-NVEQMTCATPXXXNTSLVLDFNNSTC: 604 SecStr :HHHHHHHHT TTEE-TGGG --- STT S : ExpBur :ebbebbeeeeeebe-ebeebebeee---eeebeeeeeeeee: |