Protein Model on 3vq1_A_1_D_1 (TEMPLATE: 3vq1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [596 aa] Toll-like receptor 4 :TLR4_MOUSE
2 b D 1 (D) polymer(polypeptide(L)) [135 aa] Lymphocyte antigen 96 :LY96_MOUSE 570I(S) 572G(N) 581Q(M) 601D(E) 608K(L) 609S 630R(D) 631Y(F) 632I(D) 633S(G) (identity: 10.0 %/28.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3vq1_A_1 identity=28.8%
queryA       259:RCFNAPFPCVPCDGGASI-NID----------RFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF--LTMLPRLEILDLS: 345
                : *       ** *   *  ***             * *   *  * **      *         **  * *  *        * *  ** *  *      :
3vq1_A_1      17:QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK: 115
SecStr          :E TTS  SS  TTS TT SEEE  SS   EE TTTTSS  S  EEE TT    EE TTTTTT SS  EEE TT  -     TTTTTT TT  EEE TTS :    
ExpBur          :ebeeeebeebbeebeeebeebbbbebebeebebeebeebeebeebbbbebebeebeeebbebbeebbebbbebbe-beebeeebbeebeebebbbbbebe:    

queryA       346:FNYIKGSYP-------QHINISRNF----------SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLS-TINLGINFIKQIDFKLFQNFSNLEIIYLSE: 427
                :      * *          *   **          * *  *    *     *     * * *   *          * *  *    **     *      :
3vq1_A_1     116:LASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN: 214
SecStr          :   ST-T S TT TT  EEE  SS        GGGGT TT  EEE  SS   EE TTTTHHHHH TT   EEE TT    EE TTTTTT EEEEEEEES :    
ExpBur          :beebe-ebebeebeebeebebbebebeebebbebbeebeebeebbbbebebeebeeebbebbeeeeeeebbbbbbebebeebeeebbeebebebbbbebb:    

queryA       428:NRISPLVKDTRQSYANSSSFQRHIRKRRSTDFE-------FDP-----------------HSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQF: 501
                :   *   *   *  *       *        *        * *                   *   *     *  * *   *  *   **      *  *:
3vq1_A_1     215:FNSSNIMKTCLQNLAG-----LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN--DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF: 307
SecStr          : SSHHHHHHHHGGGTT----- EEEEEEEE BTTB   S   GGGGGGGGSSEEEEEEE   S--S  GGGTT GGGTT SEEEEES          TT :    
ExpBur          :beebeebeebbeebbe-----bebebbbbbbeeeeeebeebebebbebbeebebeebebbbbe--ebbeebbebebbbebebbbbebbbbeebeebeeeb:    

queryA       502:E-----------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQN: 582
                :                   **    * *  *            * *   ****  * * *        *    *  **** *      *           :
3vq1_A_1     308:KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMG: 397
SecStr          :  SEEEEES   SS      SS  EEEEES SS  B    ---  TT  EEE  SS  BEEEE  HHHHT S   EEE  S SEEEE S ------- TT:    
ExpBur          :ebeebebeebebeebbebebeebeebbbbebeeebebeeb---ebeebeebbbbebebebeebbbeebbbbeebebbbbbebeebebebe-------beb:    
Contact         :                                                                                       b b        b 

queryA       583:FTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNW: 681
                :   *  *   *      *        **  *      ***           ** **  *  *    *  *       * *    ** *      *    *:
3vq1_A_1     398:LEELQHLDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISW: 490
SecStr          : TT  EEE TTSEEESTTTTTTT--TT TT  E----EE TTS  EE  TTTTTT TT  EEE TT EEGGGEE S  SS- TT  EEE TTS   EE T:    
ExpBur          :beebeebbbeebebeebeeebbb--ebbeebeb----bbbbebebebeeebbbebbeebebbebbebbbeeebbbebbee-beebbebbbbebebeebee:    
Contact         :                  b      bb                    bbbb                                                 

queryA       682:TLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIG: 781
                :       ** **    * ****  *      ** **  * ***                   *   *    **         *    *  *   * *   :
3vq1_A_1     491:GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI-----------------ETSKGILQHFPKS---------LAFFNLTNNSVACICEHQ: 564
SecStr          :TTTTT TT  EEE  SS  S EEGGGTTT TT  EEE TTS  -----------------  EES GGGS TT---------  EEE  SS    SGGGH:    
ExpBur          :ebbeebeebeebebbebebeebbbebbeebeebeebebbebeb-----------------ebbeeebeebbee---------beebbbbebebbbeeeee:    

queryA       782:DFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTC: 822
                : *  *  *             ** *              **:
3vq1_A_1     565:KFLQWVKEQKQFLV-NVEQMTCATPXXXNTSLVLDFNNSTC: 604
SecStr          :HHHHHHHHT TTEE-TGGG      ---   STT    S  :    
ExpBur          :ebbebbeeeeeebe-ebeebebeee---eeebeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123