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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [668 aa] | Toll-like receptor 3 :TLR3_HUMAN | |
2 | b | L 1 (K) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 530P 531H(S) 555D(N) 585N(K) (identity: 25.0 %/30.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3ulv_A_1 identity=30.7% |
queryA 46:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 142 : * ** * ** * * * * * ** * * * * * * * * * : 3ulv_A_1 18:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQK-----------LPMLKVLNLQHNELSQLSDKTF: 103 SecStr :EEE SS SS S TT EEE S SGGGSS TT EEE SS ---HHHHHH----------- TT EEE SSS TTTS: ExpBur :ebebeeeeeeebbeebeeebeebebbebebeebebeebeebeebeebbbbebebeebe---eebbee-----------beebeebbbeebebeebeeebb: queryA 143:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 241 : **** * * * * ** * * * * * * * * * *** ** ** *** * : 3ulv_A_1 104:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQIKEFSPGC: 200 SecStr :TT TT EEE SS S TTTT TT EEE SS SS TT EEE SS EE HHHHGGGTT--- EEEEEE TT EE TTT: ExpBur :bebeebbebbbbebebeebeebbbbebeebebbbbbebbbeebebbeeebbeebeebbbbebebeebeeebbebbee---bebeebbbbebebeebeeeb: queryA 242:FKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIASGAFLTMLPRL: 339 :* * * * * * * * * ** * * * *** * * ** *: 3ulv_A_1 201:FHAIGRLFGLFLNN--------------VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQL: 284 SecStr :TTSSSEEEEEE TT-------------- HHHHHHHHHHHTTTS EEE TTS EE TTTT GGGGS EEE SS -- EE TTTTTT TT : ExpBur :bebbeebebbbbee--------------bebbeebbeebbebbbebebeebbbbebebeebeeebbebbeebebbbbbbbebeb--eebeeebbbebeeb: queryA 340:EILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS-: 431 :* * * * ** * * * * * * * *** * * * * * * * ** ** * : 3ulv_A_1 285:EYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL: 377 SecStr : EEE S B-----SEE- SGGGTT S EEE TT B TTS EE TTT-TSS TT EEE S B TTSSTT TT EEE TT BS : ExpBur :eebebbebeb-----eeb-eeebbebbeebeebbbbebbbeeeeeeeeebebeeeb-bebbeebeebbbebbbbeebeeebbeebeebeebbbbebbeeb: queryA 432:-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIF-FIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAI: 529 : * * * * * * * * * * *** ** * * * ** * * * * : 3ulv_A_1 378:RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-------------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALV: 463 SecStr : EE SSTT TTTTS EEE TTS EE TTTTSS TT ------------- EEE SS EEE SGGGTT TT EEE S SEEE- TTTTTT : ExpBur :eebeeebbebbeebebeebbbbebebeebeebbbeebeeb-------------ebbbbbebebebebebebbeebeebebbebbebeebe-bbeebbeeb: queryA 530:PHVKYLDLTNNRLDFDNA----SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWN: 625 :* * * * * * * * **** * ** * * * *** * * : 3ulv_A_1 464:PSLQRLML--RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHAN---------------------: 534 SecStr :TT EEE --TTS EESTT SS TTTT TT EEE TT GGGGTT T------T EEE SS HHHHSTTS---------------------: ExpBur :eebeebbb--eebebeebebeebbbeebeebbbbbbbebebeebeeebbebbe------ebeebbbbebebbebbeeeb---------------------: Contact :bb b b queryA 626:DDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRIS: 725 : * *** * * * * ** * * * ** * * * * : 3ulv_A_1 535:--PGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------------------LGLNNLN: 583 SecStr :--TTS TTTT TT EEE SS TTTT----SS SS EEE--------------------------------------------- SS : ExpBur :--eeebbebbeebeebeebbbbbbebeebbeebb----eebeebeebb---------------------------------------------bbebebe: queryA 726:HLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGDQRGKSIVSLELTTC: 822 : ** *** * * ** * * * *** *** * * * * ** * * * * *: 3ulv_A_1 584:TLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 680 SecStr : TTSSTT S EEE TTS HHHH-TTTTSS SEEE S EE SHHHHHHHHHHHTT- B TTTTTS BEEESGGGBT BGGG S : ExpBur :ebeeebbeebeebebbbbbebebebbeeebb-eebbeebeebbbeebebebeeeebbebbebbee-eebebeeeeeebebeeeeeeeeeebeebeeeee: |