Protein Model on 3ulu_A_1_M_1 (TEMPLATE: 3ulu )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [659 aa] Toll-like receptor 3 :TLR3_HUMAN
2 b M 1 (M) branched(oligosaccharide) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 530P 531H(S) 555D(N) 585N(K) (identity: 25.0 %/31.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3ulu_A_1 identity=31.1%
queryA        46:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 142
                : * **   *  **       * * *  *         *     **      *         *                *  *  * *  * * *      :
3ulu_A_1      18:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQK-----------LPMLKVLNLQHNELSQLSDKTF: 103
SecStr          :EEE  SS  SS  S   TT  EEE  S       SGGGTT TT  EEE  SS      ---HHHHHH----------- TT  EEE  SSS     SSTT:    
ExpBur          :ebebeeeeeeebbeebeeebeebebbebebeebebeebeebeebebbbbbebebeebe---eebbee-----------beebebbbbeebebeebeeebb:    

queryA       143:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 241
                :     **** *  * *  *         **  * *  *     *       *      * *     *    *        *** ** **  ***  *   :
3ulu_A_1     104:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQIKEFSPGC: 200
SecStr          :TS TT SEEE  SS      S TTTT TT  EEE  SS        SS   TT  EEE  SS   EE HHHHGGGTT--- EESEEE TT    EE TTT:    
ExpBur          :bebeebeebbbbebebeebeebbbeebeebebbbbbebbbeebebbeeebbeebeebbbbebebebbeeebbebbee---bebeebbbbebebeebeeeb:    

queryA       242:FKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIASGAFLTMLPRL: 339
                :*     *  * *                   * *           *  * * **   *       *       *  ***  * *            ** *:
3ulu_A_1     201:FHAIGRLFGLFLNN--------------VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQL: 284
SecStr          :TTTSSEE EEE TT--------------    HHHHHHHHHHTTTS   EEE TTS   EE TTTT GGGGS   EEE TTS  -- EE TTTTTT SS :    
ExpBur          :bebbeebebbbbbe--------------bebbeebbeebbeebbebebeebbbbebebeebeeebbebbeebebbbbbbbebeb--eebeeebbbebeeb:    

queryA       340:EILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS-: 431
                :*   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **    **    * :
3ulu_A_1     285:EYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL: 377
SecStr          : EEE  S  B----- EE- SGGGTT TT  EEE TT B    TTS    EE TTS-STT TT  EEE  S  B    TTSSTT TT  EEE TT BS  :    
ExpBur          :eebebbebeb-----eeb-eeebbebbebbeebbbeebbbeeeeeeeeebebbeeb-bebbeebeebbbbbbbbeebeeebbebbeebeebbbbebbeeb:    

queryA       432:-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIF-FIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAI: 529
                :  *   *  * * *        *      * *  *   *                *** ** *           *  *    ** *   * *    *   :
3ulu_A_1     378:RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-------------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALV: 463
SecStr          : EE TTTTGGGTT    EEE TTS   EE TTTTSS TT ------------- EEE  SS   EE  SGGGTT SS  EEE  S S EE-  TTSSTT :    
ExpBur          :eebeeebbebbeebebeebbbbebebbebeebbbeebeeb-------------ebbebbebebebebebebbeebeebebbebbebeebe-bbeebbeeb:    

queryA       530:PHVKYLDLTNNRLDFDNA----SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWN: 625
                :*    * *   *    *     *    *  *  **** *            **       *  * * ***   *    *                     :
3ulu_A_1     464:PSLQRLML--RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHAN---------------------: 534
SecStr          :TT  EEE --TTS EESTT SS TTTT TT  EEE TTS      GGGSTT T------T  EEE  SS  GGGGSTTS---------------------:    
ExpBur          :eebeebbb--eebebeebeeeebbbeebeebbbbbbbebebeebeeebbebbe------ebeebbbbebebbebbeeeb---------------------:    
Contact         :bb                           b                             b                                        

queryA       626:DDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRIS: 725
                :      *   ***  *  * *  *    ** * *      * ** * *                                             *  *   :
3ulu_A_1     535:--PGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------------------LGLNNLN: 583
SecStr          :--TT    TTTT TT  EEE TTS      TTSS----TT TT  EEE---------------------------------------------  SS   :    
ExpBur          :--eeeebebbeebeebbebbbbbbebeebbeebb----eebeebeebb---------------------------------------------bbebebe:    

queryA       726:HLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGDQRG: 811
                : **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     *  *    *:
3ulu_A_1     584:TLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPHYHG: 669
SecStr          :   TTSSTT SS  EEE  SS      HHHH-TTTTSS SEEE  S  EE SHHHHHHHHHHHTT-  SB TTTTTS  EEESGGGTT:    
ExpBur          :ebeeebbeebeebeebbbbebebeebeeebb-eebbeebeebbbeebebebeeebeeebeebeee-eebebeeeeeebebeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123