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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [659 aa] | Toll-like receptor 3 :TLR3_HUMAN | |
2 | b | J 1 (I) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 330G(N) 359I(F) 360S 361R(H) (identity: 25.0 %/31.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3ulu_A_1 identity=31.1% |
queryA 46:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 142 : * ** * ** * * * * * ** * * * * * * * * * : 3ulu_A_1 18:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQK-----------LPMLKVLNLQHNELSQLSDKTF: 103 SecStr :EEE SS SS S TT EEE S SGGGTT TT EEE SS ---HHHHHH----------- TT EEE SSS SSTT: ExpBur :ebebeeeeeeebbeebeeebeebebbebebeebebeebeebeebebbbbbebebeebe---eebbee-----------beebebbbbeebebeebeeebb: queryA 143:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 241 : **** * * * * ** * * * * * * * * * *** ** ** *** * : 3ulu_A_1 104:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQIKEFSPGC: 200 SecStr :TS TT SEEE SS S TTTT TT EEE SS SS TT EEE SS EE HHHHGGGTT--- EESEEE TT EE TTT: ExpBur :bebeebeebbbbebebeebeebbbeebeebebbbbbebbbeebebbeeebbeebeebbbbebebebbeeebbebbee---bebeebbbbebebeebeeeb: queryA 242:FKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIASGAFLTMLPRL: 339 :* * * * * * * * * ** * * * *** * * ** *: 3ulu_A_1 201:FHAIGRLFGLFLNN--------------VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQL: 284 SecStr :TTTSSEE EEE TT-------------- HHHHHHHHHHTTTS EEE TTS EE TTTT GGGGS EEE TTS -- EE TTTTTT SS : ExpBur :bebbeebebbbbbe--------------bebbeebbeebbeebbebebeebbbbebebeebeeebbebbeebebbbbbbbebeb--eebeeebbbebeeb: Contact : b queryA 340:EILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS-: 431 :* * * * ** * * * * * * * *** * * * * * * * ** ** * : 3ulu_A_1 285:EYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL: 377 SecStr : EEE S B----- EE- SGGGTT TT EEE TT B TTS EE TTS-STT TT EEE S B TTSSTT TT EEE TT BS : ExpBur :eebebbebeb-----eeb-eeebbebbebbeebbbeebbbeeeeeeeeebebbeeb-bebbeebeebbbbbbbbeebeeebbebbeebeebbbbebbeeb: Contact : bbb queryA 432:-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIF-FIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAI: 529 : * * * * * * * * * * *** ** * * * ** * * * * : 3ulu_A_1 378:RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-------------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALV: 463 SecStr : EE TTTTGGGTT EEE TTS EE TTTTSS TT ------------- EEE SS EE SGGGTT SS EEE S S EE- TTSSTT : ExpBur :eebeeebbebbeebebeebbbbebebbebeebbbeebeeb-------------ebbebbebebebebebebbeebeebebbebbebeebe-bbeebbeeb: queryA 530:PHVKYLDLTNNRLDFDNA----SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWN: 625 :* * * * * * * * **** * ** * * * *** * * : 3ulu_A_1 464:PSLQRLML--RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHAN---------------------: 534 SecStr :TT EEE --TTS EESTT SS TTTT TT EEE TTS GGGSTT T------T EEE SS GGGGSTTS---------------------: ExpBur :eebeebbb--eebebeebeeeebbbeebeebbbbbbbebebeebeeebbebbe------ebeebbbbebebbebbeeeb---------------------: queryA 626:DDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRIS: 725 : * *** * * * * ** * * * ** * * * * : 3ulu_A_1 535:--PGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------------------LGLNNLN: 583 SecStr :--TT TTTT TT EEE TTS TTSS----TT TT EEE--------------------------------------------- SS : ExpBur :--eeeebebbeebeebbebbbbbbebeebbeebb----eebeebeebb---------------------------------------------bbebebe: queryA 726:HLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGDQRG: 811 : ** *** * * ** * * * *** *** * * * * ** * * * *: 3ulu_A_1 584:TLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPHYHG: 669 SecStr : TTSSTT SS EEE SS HHHH-TTTTSS SEEE S EE SHHHHHHHHHHHTT- SB TTTTTS EEESGGGTT: ExpBur :ebeeebbeebeebeebbbbebebeebeeebb-eebbeebeebbbeebebebeeebeeebeebeee-eebebeeeeeebebeeeeeeee: |