Protein Model on 3t6q_A_1_JA_1 (TEMPLATE: 3t6q )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [601 aa] CD180 antigen :CD180_MOUSE
2 b JA 1 (D) non-polymer(GOL) GLYCEROL 238S(Q) 279D(H) 280R(E) (identity: 0.0 %/30.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3t6q_A_1 identity=30.0%
queryA       212:SLSHVPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP: 311
                : *   *  ** *   *  *      *    *  ***** ***     **                 *    **    *  * *    *            :
3t6q_A_1      23:GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT----RC-------------QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK: 105
SecStr          :  SS  TTS TT  EEE TT   SEE TTTSTT TT SEEE T----T -------------   EE TTTTTT TT  EEE TT   SEE TTTTSS T:    
ExpBur          :ebeebbeebeeebebbbbbebebeebeeebbeebeebeebbbb----eb-------------ebeebeeebbebbeebebbbbbbbebeebbeebbbbbe:    
Contact         :                          b                                        bb                               

queryA       312:HLKVLDLEFNYLVGEIASGAFLTM--LPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQI: 409
                : ** *          * *  *        ** * *  * *       *     *     *  *         *   *   * *  ***  **  * *  *:
3t6q_A_1     106:ALKHL----FFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-----IKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAGI: 194
SecStr          :T  EE----E TTS  S GGGS  TT TT  EEE  SS    -----    TT   T-T  EEE  SS   EE HHHHHTTTT  SEE-EE TT    EE:    
ExpBur          :ebeeb----ebeebebeebebbbbeebeebebbebbebebee-----bebeeebebe-ebeebbbeebebeebbeebbeebeebeebe-bbbbebebebb:    

queryA       410:DFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANS---SSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPD: 506
                :    *                    *    *   *     *          *    *               *        *     * *  * *     :
3t6q_A_1     195:EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED------MDDEDISP---------AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG: 279
SecStr          : TTTTTT EEEEEE TT S HHHHHHHTTT EEEEEE    TT------S      G---------GGGGGGGGSEEEEEE TT   SS  TTTTTT TT:    
ExpBur          :eeebbeebebeebebbbbeebeebbebbeebebeebebbbeee------eeeeebee---------ebbebbeebebebbbbbebebeebeeebbebbee:    

queryA       507:IACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEF----IQNFTNLKVLNLSHNNIYTLTDK: 602
                :   * * *       **         * * *  *   * *   *   *      *        * * *  **       *  **  * ***  * *  * :
3t6q_A_1     280:LQELDLTATHLSELPSG--LVGLSTLKKLVLSANK--FEN---LCQISASNFPSLTH----LSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-SDC: 367
SecStr          : SEEE TTS  S   SS--  S TT  EEE TT  -- SB---GGGG GGG TT SE----EE  S SS  B  SSTTTT TT  EEE  SS   E-EEE:    
ExpBur          :beebebebbebeebeee--beebeebeebebbebe--bee---beebbbebbeebee----bebeebeeebebbebbbeebeebeebebbebebeb-eeb:    

queryA       603:YNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGN---: 698
                : **    *  *      *    *         **    *  ***   ***       * **   *  *      *      *    * *  * * **   :
3t6q_A_1     368:CNLQLRNLSHL----QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL-LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP: 462
SecStr          :STTTTTT TT ---- EEE  S S EEE TTTTTT TT SEEE TT  EE  TT  TTTT TT-  EEE TT   BTT TTTTTT TT  EEE TT B G:    
ExpBur          :beebbeebeeb----eebebbebebbebeeebbeebeebeebebbebebeeeeeebbbeebee-beebebbebebebbeeebbeebeebeebbbebbebe:    

queryA       699:--------------KLLFLTDSLSDFTS-------SLRTL---LLSHNRISHLPSGFLSEVSSLK--HLDLSSNLLKTINKSALETKTTTKLSMLELHGN: 772
                :               *  *  *  *  *       **       *****     *      * **   * * **    *  * *            *  *:
3t6q_A_1     463:KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT---SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQR--TINLRQN: 557
SecStr          :GGEE SS GGGG TT  EEE TTS   EE TTTTTT TT  EEE  SS   ---GGGGGGGTT  S EEE  SS      GGGHHHHHTSS--EEE TT :    
ExpBur          :ebebeeebbbeebeebeebbbbebebeebeeebbeebeebeebbbbebebe---bebbebbeebeebebbbbbbebeebeeebbebbeebe--bbbbeeb:    

queryA       773:PFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELT: 820
                :*  ***    *  *  *    *     *  *  *   **       * :
3t6q_A_1     558:PLDCTCSNIYFLEWYKENMQ-KLEDTEDTLCENPPLLRGVRLSDVTLS: 604
SecStr          : EE SGGGHHHHHHHHH GG-GEE GGG BEEESGGGTT BGGG    :    
ExpBur          :ebbbeeebbebbebbeebee-ebeebeebebeeeeeeeeeebeebeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123